PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco009528.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Protein Properties

Length: 213aa MW: 24345.7 Da PI: 9.2973

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco009528.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.5	9e-17	116	206	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v+ +l l+k+f++++ +k ++ t+tl de+ ++++ + ++++ l++GW++F ++L +gD +vF+l++ +f +v+++r Aco009528.1 116 FVKPMLQSHVTGGFWLGLSKQFCNKYL-PK-RDSTITLVDEEDEEFDTVY--LANKRG--LSGGWRGFSLHHELVDGDALVFQLIEPARF--KVHIIR 205 89*******************9994.44.4559***********..555555..9********************9986666..999998 PP S CS B3 99 k 99 + Aco009528.1 206 A 206 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.81E-24	109	208	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.5E-20	110	208	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.34E-25	114	205	No hit	No description
PROSITE profile	PS50863	11.335	116	207	IPR003340	B3 DNA binding domain
SMART	SM01019	3.4E-20	116	207	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.7E-15	116	206	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSPSLSYEDL RNKKLQENKR KLEELKLSHL SVALRDASSP KPSPSKSVKR KALQEQRLVA 60 VRRSVRVANL PEPPTYRPCK RRDLSNRVYA SDEERMYAET RAEEVEAELG SEFPTFVKPM 120 LQSHVTGGFW LGLSKQFCNK YLPKRDSTIT LVDEEDEEFD TVYLANKRGL SGGWRGFSLH 180 HELVDGDALV FQLIEPARFK VHIIRASGYH DQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020103583.1	1e-142	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	6e-91	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A199UN05	1e-130	A0A199UN05_ANACO; B3 domain-containing protein (Fragment)
STRING	XP_008788064.1	9e-97	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-58	B3 family protein

Link Out ? help Back to Top
Phytozome	Aco009528.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]