PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco009564.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

CAMTA

Protein Properties

Length: 1038aa MW: 116148 Da PI: 5.639

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco009564.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	181.7	8.5e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 l+ ++rwl++ ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+een++fqrr+y Aco009564.1 20 LEAQHRWLRPAEICEILRNYRKFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGEENENFQRRSY 117 5679******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylevk 118 w+Leee+ +ivlvhy+evk Aco009564.1 118 WMLEEEFMHIVLVHYREVK 136 **************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	84.506	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.5E-79	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.0E-50	21	134	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.3E-8	451	536	IPR013783	Immunoglobulin-like fold
CDD	cd00102	3.59E-4	451	538	No hit	No description
Pfam	PF01833	3.8E-10	452	529	IPR002909	IPT domain
SuperFamily	SSF81296	2.49E-18	452	537	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	3.58E-17	636	748	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.263	637	748	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.7E-17	638	749	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.41E-14	643	746	No hit	No description
PROSITE profile	PS50088	8.897	687	719	IPR002110	Ankyrin repeat
SMART	SM00248	0.015	687	716	IPR002110	Ankyrin repeat
SMART	SM00248	390	726	755	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	6.9E-8	860	913	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.16	862	884	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.517	863	892	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0033	865	883	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0092	885	907	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.615	886	910	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.6E-4	888	907	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010150	Biological Process	leaf senescence
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1038 aa Download sequence Send to blast
MADARRYALT PQLDIEQILL EAQHRWLRPA EICEILRNYR KFRIAPEPPN RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEENE NFQRRSYWML 120 EEEFMHIVLV HYREVKGGRP NFSRSREVEE VAQVSHTDSP ACSNSFTSQS HIPSQTTDAE 180 SPNSGQTSEY EDAESDNYPT SSRYNPIPEM RQYEDGRGHV MDAPLLNPYV SIPSPTTPPI 240 SDYYSVAQED TTTVFDGTGG GLTFSGSKTT QLELASWDEV LAHCTTGFQT PYVQPSVGSR 300 QATAFEDNSS LETITFGEAY NNDLLPKEVY GIGAEGKLLW QHPSPASGSL GIDGEYGRSI 360 EENIGHSPLT KQASLDLSHL EADGLKKYDS FSRWMSKELE EVDDSQLRSN SEPYWNTVDD 420 ESVVESSNIS NHEPLDSYAV SPSLSQDQLF SIIDFSPSWA FASLETKVLI TGTFLKNEDI 480 DKCKWSCMFG EVEVPVEVLA DGTLRCYAPP HKPGRVPFYV TCSNRLACSE VREFEFRSTD 540 AHYMETSDSS ISSINDMHLH IRLEKLLTLG PVDQQKGVSN VTKEKIDLNN KVSALMMDDD 600 EWSSLLKVTD EKEVSIEQAK DQLAEKLIKE KLHSWLIMKI YEEEGKGPNI LGKEGQGVIH 660 LTAALGYDWA IRPIIVAGVN VNYRDVHGWT ALHWAAFCGR ERTVVALIAM GAAPGALTDP 720 TPEFPAGRTP ADLASANGHK GIAGFLAESS LTSHLNALTL KDSKGSDVAE ICGLPSLEDV 780 PGKVPCQLSE GDDGQGGSLK DSLSAVRNAS QAAARIYQVF RVQSFHRKKL VEYGDEKCGV 840 SDERALSLIS VKSAKPGQHD MPLQSAAIRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH 900 QVRKQYRKIV WSVGIVEKAI LRWRRKGCGL RGFRPEGLIE GPSMQIQAAK TDDYDFLQEG 960 RRQSEARLQT ALARVKSMVQ YPEARDQYRR LLTVVTELQE SKAAQDKLLS DIEGAADGDF 1020 MVELEQLWQD DTPMPSI*

Sequence ? help Back to Top

Protein Sequence Length: 1038 aa Download sequence Send to blast

MADARRYALT PQLDIEQILL EAQHRWLRPA EICEILRNYR KFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGEENE NFQRRSYWML  120
EEEFMHIVLV HYREVKGGRP NFSRSREVEE VAQVSHTDSP ACSNSFTSQS HIPSQTTDAE  180
SPNSGQTSEY EDAESDNYPT SSRYNPIPEM RQYEDGRGHV MDAPLLNPYV SIPSPTTPPI  240
SDYYSVAQED TTTVFDGTGG GLTFSGSKTT QLELASWDEV LAHCTTGFQT PYVQPSVGSR  300
QATAFEDNSS LETITFGEAY NNDLLPKEVY GIGAEGKLLW QHPSPASGSL GIDGEYGRSI  360
EENIGHSPLT KQASLDLSHL EADGLKKYDS FSRWMSKELE EVDDSQLRSN SEPYWNTVDD  420
ESVVESSNIS NHEPLDSYAV SPSLSQDQLF SIIDFSPSWA FASLETKVLI TGTFLKNEDI  480
DKCKWSCMFG EVEVPVEVLA DGTLRCYAPP HKPGRVPFYV TCSNRLACSE VREFEFRSTD  540
AHYMETSDSS ISSINDMHLH IRLEKLLTLG PVDQQKGVSN VTKEKIDLNN KVSALMMDDD  600
EWSSLLKVTD EKEVSIEQAK DQLAEKLIKE KLHSWLIMKI YEEEGKGPNI LGKEGQGVIH  660
LTAALGYDWA IRPIIVAGVN VNYRDVHGWT ALHWAAFCGR ERTVVALIAM GAAPGALTDP  720
TPEFPAGRTP ADLASANGHK GIAGFLAESS LTSHLNALTL KDSKGSDVAE ICGLPSLEDV  780
PGKVPCQLSE GDDGQGGSLK DSLSAVRNAS QAAARIYQVF RVQSFHRKKL VEYGDEKCGV  840
SDERALSLIS VKSAKPGQHD MPLQSAAIRI QNKFRGWKGR KEFLLIRQRI VKIQAHVRGH  900
QVRKQYRKIV WSVGIVEKAI LRWRRKGCGL RGFRPEGLIE GPSMQIQAAK TDDYDFLQEG  960
RRQSEARLQT ALARVKSMVQ YPEARDQYRR LLTVVTELQE SKAAQDKLLS DIEGAADGDF  1020
MVELEQLWQD DTPMPSI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:18298954, ECO:0000269\|PubMed:19122675, ECO:0000269\|PubMed:19270186, ECO:0000269\|PubMed:21900483, ECO:0000269\|PubMed:22345509, ECO:0000269\|PubMed:22371088, ECO:0000269\|PubMed:23072934, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25157030, ECO:0000269\|PubMed:28351986, ECO:0000269\|PubMed:28407487, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00042	PBM	Transfer from AT2G22300	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269\|PubMed:11162426, ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:22345509}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020088405.1	0.0	calmodulin-binding transcription activator 3-like isoform X2
Swissprot	Q8GSA7	0.0	CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBL	A0A199UHZ2	0.0	A0A199UHZ2_ANACO; Calmodulin-binding transcription activator 3 (Fragment)
STRING	XP_008795547.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP608	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	signal responsive 1

Link Out ? help Back to Top
Phytozome	Aco009564.1

Publications ? help Back to Top
Zhang L,Du L,Shen C,Yang Y,Poovaiah BW Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling. Plant J., 2014. 78(2): p. 269-81 [PMID:24528504] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae. Front Plant Sci, 2016. 7: p. 177 [PMID:26973658] Benn G, et al. Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60 [PMID:27432993] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lolle S, et al. Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles. Cell Host Microbe, 2017. 21(4): p. 518-529.e4 [PMID:28407487] Kim YS, et al. CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection. Plant Cell, 2017. 29(10): p. 2465-2477 [PMID:28982964] Jacob F, et al. A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana. New Phytol., 2018. 217(4): p. 1667-1680 [PMID:29226970]