PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009603.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 541aa    MW: 61573.4 Da    PI: 4.7705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009603.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-05332378252
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                  +  + erE+  Rd++N+ f++L ++l ++     + + Ka iL  +++ ++
  Aco009603.1 332 KIHKAEREKLKRDQLNDLFSKLDKMLEPD----RQNNGKACILSDTTRIVR 378
                  566889********************997....455666777766666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1431131.96E-6613219No hitNo description
PfamPF009561.2E-2673220IPR002164Nucleosome assembly protein (NAP)
PROSITE profilePS5088810.379330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-10331400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-7331399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MVVDKGKRCK VAERGEESDR VDGELVPYIE KLQEIQDELE KVNEEASDKV LEVEQKYNEI  60
RRPVYMRRSD IIKSIPDFWL TAFLSHPVLG DLLNKEEQKI FRHLISLDVE DFKDLKSGYS  120
ITFNFSPNPY FEDTCLRKTY SFSDEGTTNI TGTTIKWKEG MNCVNGEARE NNGSKRPFGE  180
ESFFSWFSET HPKRMPEMFS DEIAEIIKED LWPNPLKYFN HEAGDEFEGD EDDDEGRWDG  240
RFCGEFLEAR QMVHGVNGSD PDERESEEAR IRDLGTAWGT QPNQKTGSGV RNLSMVSESE  300
QSSSMANGEI VAERPAGRSV PSKKSQAQVP KKIHKAEREK LKRDQLNDLF SKLDKMLEPD  360
RQNNGKACIL SDTTRIVRDL IAQVESLRKE NAALQTESHY VTTEKNELRD ENAVLQAQIS  420
DLQCEVRARM GYNGVWTNPP NVNTINALHP TTNPMLQQPP VIERAFTTPP RELQLFPGAA  480
GSPDHESPSP RVRRPHASYA TPSNTWTERL LPGLRREAQE EEQQQSSSGI TESSREDRVG  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6jqv_A7e-92162236215NAP1-related protein 2
6jqv_B7e-92162236215NAP1-related protein 2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6619331e-140KM661933.1 Ananas bracteatus clone 45094b microsatellite sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.36e-33bHLH family protein