PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009779.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 285aa    MW: 31885.6 Da    PI: 6.9384
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009779.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3932.1e-2940143199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                  f+k ltpsdv+k++rlv+pk++ae+h          e++  l++ de g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F +++   + +
  Aco009779.1  40 FEKHLTPSDVGKLNRLVIPKQHAEKHfpldaeA--GEKGLILSFDDEAGKPWQFRYSYWSSSQSYVLTKGWSRYVKEKRLDAGDVVAFGRSRAgAGDR 135
                  89*************************999643..346779************************************************988777777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l++  +r+
  Aco009779.1 136 LFIIGCRR 143
                  77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-3935142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.02E-2837142IPR015300DNA-binding pseudobarrel domain
CDDcd100178.34E-2238143No hitNo description
PfamPF023623.0E-2640143IPR003340B3 DNA binding domain
SMARTSM010194.1E-1940144IPR003340B3 DNA binding domain
PROSITE profilePS5086313.77540143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTTNPIPPHY PQTWYWEPSM MSSYNHYHYP GIDYEKEHLF EKHLTPSDVG KLNRLVIPKQ  60
HAEKHFPLDA EAGEKGLILS FDDEAGKPWQ FRYSYWSSSQ SYVLTKGWSR YVKEKRLDAG  120
DVVAFGRSRA GAGDRLFIIG CRRSGGHDDA HVPWSSSSSS HVYLRSPVQQ DNCYNLRAGG  180
HKDRPADSPV PASAPAPENP RRLRLFGVNL ECGPDLQESE SACLGSTSIL CAFSCISSTL  240
LYGTRGTTRL DIESNSHSSW ALREALACAE RECEEGYVLL LTRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-47351433113B3 domain-containing transcription factor NGA1
5os9_B3e-47351433113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097413.11e-168B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI07e-62Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A199UGW71e-147A0A199UGW7_ANACO; B3 domain-containing protein
STRINGXP_008799673.12e-74(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.13e-52B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]