PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009903.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 288aa    MW: 32159.3 Da    PI: 10.1995
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009903.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.62e-19160193134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Aco009903.1 160 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 193
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-20154206IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-13156193No hitNo description
PROSITE profilePS5011412.466158190IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-15158193IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.52E-14159191No hitNo description
PROSITE patternPS003440160185IPR000679Zinc finger, GATA-type
PfamPF003203.8E-17160193IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSQVYSIPRE EGDQGRVHGL PTLTLVNDTS LSYSFFMNTS QDHVANNGAH HFSQQVHQKE  60
PNEQFLFIRS TDHPVSFPAN KDQVQLHDRY ATEKDDPNGT TKWMPSKMRF IKKMMNSDHM  120
VTNKPRRIAQ GVLQDQTEVN QEGATSNHTH NSLNGIIRVC SDCNTTKTPL WRSGPRGPKS  180
LCNACGIRQR KARRAAMAAA AAAANGGLIP NEVHTKARKE KRPSDDRTVP FKKRCKFTTG  240
SAQKNVRFDD FTISLSKSSA FQYQVFPQDE RDAAILLMAL SCGLIRG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6625531e-156KM662553.1 Ananas bracteatus clone 46374b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020096791.10.0GATA transcription factor 21-like
TrEMBLA0A199VSM11e-170A0A199VSM1_ANACO; Putative GATA transcription factor 22 (Fragment)
STRINGXP_008793253.15e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.17e-37cytokinin-responsive gata factor 1