PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009969.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB_related
Protein Properties Length: 372aa    MW: 39501.7 Da    PI: 8.3842
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009969.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-12117161347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+  ++ + ++lG+g+W+ Iar +   Rt+ q+ s+ qky
      Aco009969.1 117 PWTEDEHRMFLLGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKY 161
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.5110166IPR017930Myb domain
SuperFamilySSF466894.04E-16112166IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-19113165IPR006447Myb domain, plants
SMARTSM007172.9E-9114164IPR001005SANT/Myb domain
CDDcd001677.81E-9117162No hitNo description
PfamPF002495.6E-10117161IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-11117160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPA RGAAGGGGGG VMRLFGVRIM EGVAPMKKSA SMGCLSSASA  60
AGGGGGGGAA AGGGSSSPAA AASAAADALR DAGYESDDPV HASSSSNCRG ERKRGIPWTE  120
DEHRMFLLGL QKLGKGDWRG IARNFVVSRT PTQVASHAQK YFIRQTNSSR RKRRSSLFDM  180
IPEMPMEQSM DQYSVPEEQF MLHSPPNEPA KVNPFPPLPL NKHQESELGA TKLTLPAIEL  240
KETTPYNSNN TPPIPIAPTL YPAFLPVPLT FWPPTLPPPP PAPPACQDEE MMEATHEVVK  300
PIPLTPKEQL TNVDEVPSIS SLSLREIEPS ALSLKLLGSD TPRQSAFHAN RVMASARTDL  360
NNGSGNVIHA V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6609321e-164KM660932.1 Ananas bracteatus clone 39783 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097909.10.0transcription factor MYB1R1-like
TrEMBLA0A199W6230.0A0A199W623_ANACO; Transcription factor MYB1R1
STRINGXP_008791498.11e-127(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-62MYB_related family protein