PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco009991.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

HSF

Protein Properties

Length: 99aa MW: 10623.9 Da PI: 10.3542

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco009991.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	75.7	8.2e-24	33	91	2	60
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 F+ k+y++++d++++++i w +++nsfvv+d+ f++++Lp Fkh+nf+SFvRQLn+Y Aco009991.1 33 FVVKTYRMVNDPSTDSVIAWGRENNSFVVVDPFVFSQTLLPANFKHNNFSSFVRQLNTY 91 9******************999********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	8.6E-15	29	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.5E-25	31	92	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.18E-22	32	91	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	3.2E-13	33	56	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.3E-19	33	91	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-13	71	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.2E-13	84	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MEKYGGGKIS RNGNNSSNNG SGGGGGAVVA APFVVKTYRM VNDPSTDSVI AWGRENNSFV 60 VVDPFVFSQT LLPANFKHNN FSSFVRQLNT YVRTLTIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5w_B	1e-17	30	91	1	62	Putative transcription factor
5d5x_B	1e-17	30	91	1	62	Putative transcription factor
5d5x_E	1e-17	30	91	1	62	Putative transcription factor
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK248538	8e-38	AK248538.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf61l22, mRNA sequence.
GenBank	AK354435	8e-38	AK354435.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1007F06.
GenBank	AK358136	8e-38	AK358136.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069K14.
GenBank	AK370399	8e-38	AK370399.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2110B13.
GenBank	HM446041	8e-38	HM446041.1 Hordeum vulgare subsp. vulgare heat shock factor C2b (HsfC2b) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020097737.1	1e-59	heat stress transcription factor C-2a-like, partial
Swissprot	Q6EUG4	1e-31	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A199W4Z0	1e-56	A0A199W4Z0_ANACO; Heat stress transcription factor C-2a
STRING	XP_008795220.1	3e-33	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	2e-29	heat shock transcription factor C1

Link Out ? help Back to Top
Phytozome	Aco009991.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]