PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009994.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family DBB
Protein Properties Length: 360aa    MW: 38768.1 Da    PI: 5.8333
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009994.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.3e-06446541
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                  C+ +e  e++  C  ++  lC  C ++ H        H++v+
  Aco009994.1  4 QCNACEAAEARVLCCADEAALCWACDEKVHAAnklagkHERVT 46
                 7******99*********************6678999998886 PP
2zf-B_box28.43.3e-095696337
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                  +kC+ ++e    +fC +++ l+C++C +++H+       H
  Aco009994.1 56 VPKCDICQESSGYFFCLEDRALFCRNCDVSIHSAnpyvsaH 96
                 589******99*********************665666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.182147IPR000315B-box-type zinc finger
CDDcd000219.45E-8347No hitNo description
SMARTSM003361.3E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501198.51754101IPR000315B-box-type zinc finger
SMARTSM003365.2E-1554101IPR000315B-box-type zinc finger
PfamPF006439.4E-85596IPR000315B-box-type zinc finger
CDDcd000211.97E-957101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MKIQCNACEA AEARVLCCAD EAALCWACDE KVHAANKLAG KHERVTLRSG GASPPVPKCD  60
ICQESSGYFF CLEDRALFCR NCDVSIHSAN PYVSAHQRFL VTGVQVGLEA TEPVMPIANE  120
QPNAALRPGE SPSKTVPKQN PTTFSSESTS VFSGQPSRGG NFANEMSFSG GTVAGTLPNW  180
RINEQLNSMA RTVEAPSRSS LKRSSMTLSD ENNAAISGQI GRDRGIANKM PFSGAAMTGN  240
MPEWPLDDLL GFTEFNNNFS FSEHASSKAD SGKLGSSDGS HRSSDEDLDA DECLGQVPEI  300
QWIVPEMPSP PTASGLHWQR NLHYPASENT AFVPDVSCSS PSLQRYFTTA LHSKRQRRG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6616641e-98KM661664.1 Ananas bracteatus clone 44320 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097487.10.0B-box zinc finger protein 22
TrEMBLA0A199W4G30.0A0A199W4G3_ANACO; B-box zinc finger protein 22
STRINGPavir.J07875.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-74light-regulated zinc finger protein 1