PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010081.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 401aa    MW: 42335.8 Da    PI: 5.0464
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010081.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.41.5e-16310343134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +C   kTp+WR gp g+ktLCnaCG++y++ +
  Aco010081.1 310 CMHCEIQKTPQWRAGPMGPKTLCNACGVRYKSGR 343
                  99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.09E-14303366No hitNo description
PROSITE profilePS5011411.016304340IPR000679Zinc finger, GATA-type
SMARTSM004012.8E-15304354IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.0E-14308342IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.08E-13309366No hitNo description
PROSITE patternPS003440310335IPR000679Zinc finger, GATA-type
PfamPF003202.9E-14310343IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEDVMAEISL DATCGDLFDH IDDLLEFPSE DDVFLEMDPP ARNSSCIVSP AVLEPFLPPP  60
LQNHTLLGGE SGDKLDHNCG ATTESNSEEE KLVTGNEDLD VAQLEWLSNF FDETTDSFTL  120
DLPNFSSKAA NNIDSNNTAN AETAANEADC FFRTSSPVSV LEHSSSLNGG SGGGGSASSY  180
SSSSSSSNSS SGSGSRSSSS SSGSSARDPE PVLVIPARAR SKRARPAPFS GRPHVTIPFL  240
APPCDASCNG EGIAESSAPP PPPSMKKKKK IKKVGSSLTD AAAAAAAAAE EGYPQLQQQQ  300
QQAPAPVRKC MHCEIQKTPQ WRAGPMGPKT LCNACGVRYK SGRLYPEYRP AASPTFVPSV  360
HSNSHKKVVE MRLKAKTTGG GALPSSDLGR DLLDYIRRRE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6658291e-179KM665829.1 Ananas bracteatus clone 51011g microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020115303.10.0GATA transcription factor 8-like
RefseqXP_020115304.10.0GATA transcription factor 8-like
TrEMBLA0A199URJ70.0A0A199URJ7_ANACO; GATA transcription factor 8
STRINGXP_008805201.12e-94(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-39GATA family protein