PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco010118.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRAS

Protein Properties

Length: 500aa MW: 54655.9 Da PI: 5.3941

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco010118.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	350.3	3.1e-107	133	494	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 ++lL+ecA +s+++l +aq++L +l ++asp++ + +R++ayf+eA+a+r+++s+ ++++ l ++ l+a+++f+++sP++kf+h+ta Aco010118.1 133 ITLLMECAVQISTENLGEAQNMLLELTQMASPYAaSCAERVVAYFAEAMASRIVNSCIGVCSPLLLP------YKTILSAFQAFNNLSPFIKFGHFTA 224 789****************************97889*************888887665444......455899*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 Nq+Ilea+++eer+HiiD+di+qGlQWpaL++ La+Rp+gpp++R+Tg+g+ s leetg +La fA++lg++fef++ +a+r dl++++ + Aco010118.1 225 NQTILEAFHQEERIHIIDLDIMQGLQWPALFHILATRPNGPPQVRMTGLGP----SGPVLEETGMQLAGFARRLGMRFEFHP-IARRSGDLDPSSVII 317 ***********************************************....9**********************.7********88 PP GRAS 197 kp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 p gEa+aV+l+ h l+d +++ ++ +++l+ +l P+vv++veqe+ hn ++Fl rf+ al+y+s++fdsl ++ + ++ r+ vE ll Aco010118.1 318 PPgrrsGEAVAVHLMR--HALYDATGDESN----TMRLLEHLGPRVVTLVEQEMGHNCGPFLGRFVGALHYFSTVFDSLGSSWAVDDVGRHRVESGLL 409 888889***998..999988888888....************************************************************ PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374 +rei nvva g r +e++++Wr+ l + GF +v++s +a++qa+l++++++ gy+v ++gsl lgWk+ L+++SaW+ Aco010118.1 410 AREIANVVAVGGPG-RGGEEKVGRWRDELARRGFVQVEMSGNAMAQAQLIVNMFPpALGYSVLhGSDGSLGLGWKGAGLYTASAWT 494 *********9.566788***********************************99736788999************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	53.2	106	472	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-104	133	494	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MTEQGFEADC ALGIIQSNDQ WLCNQIGFAL PPDNMQMTAP PYDRSLLDGH YTATVTATAT 60 DLSEFMDQLI RPNPSLSQNT DDFSIDNTPS NNNYVAQSDV HTPPQKAPRR DCYERSGDEG 120 GERPHHDHEM RMITLLMECA VQISTENLGE AQNMLLELTQ MASPYAASCA ERVVAYFAEA 180 MASRIVNSCI GVCSPLLLPY KTILSAFQAF NNLSPFIKFG HFTANQTILE AFHQEERIHI 240 IDLDIMQGLQ WPALFHILAT RPNGPPQVRM TGLGPSGPVL EETGMQLAGF ARRLGMRFEF 300 HPIARRSGDL DPSSVIIPPG RRSGEAVAVH LMRHALYDAT GDESNTMRLL EHLGPRVVTL 360 VEQEMGHNCG PFLGRFVGAL HYFSTVFDSL GSSWAVDDVG RHRVESGLLA REIANVVAVG 420 GPGRGGEEKV GRWRDELARR GFVQVEMSGN AMAQAQLIVN MFPPALGYSV LHGSDGSLGL 480 GWKGAGLYTA SAWTARSSL*

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MTEQGFEADC ALGIIQSNDQ WLCNQIGFAL PPDNMQMTAP PYDRSLLDGH YTATVTATAT  60
DLSEFMDQLI RPNPSLSQNT DDFSIDNTPS NNNYVAQSDV HTPPQKAPRR DCYERSGDEG  120
GERPHHDHEM RMITLLMECA VQISTENLGE AQNMLLELTQ MASPYAASCA ERVVAYFAEA  180
MASRIVNSCI GVCSPLLLPY KTILSAFQAF NNLSPFIKFG HFTANQTILE AFHQEERIHI  240
IDLDIMQGLQ WPALFHILAT RPNGPPQVRM TGLGPSGPVL EETGMQLAGF ARRLGMRFEF  300
HPIARRSGDL DPSSVIIPPG RRSGEAVAVH LMRHALYDAT GDESNTMRLL EHLGPRVVTL  360
VEQEMGHNCG PFLGRFVGAL HYFSTVFDSL GSSWAVDDVG RHRVESGLLA REIANVVAVG  420
GPGRGGEEKV GRWRDELARR GFVQVEMSGN AMAQAQLIVN MFPPALGYSV LHGSDGSLGL  480
GWKGAGLYTA SAWTARSSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-129	138	497	25	382	Protein SCARECROW
5b3h_A	1e-129	138	497	24	381	Protein SCARECROW
5b3h_D	1e-129	138	497	24	381	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269\|PubMed:17446396}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020080056.1	0.0	protein SCARECROW 2-like
Swissprot	Q2RB59	1e-127	SCR1_ORYSJ; Protein SCARECROW 1
TrEMBL	A0A199URW3	0.0	A0A199URW3_ANACO; Protein SCARECROW 1
STRING	XP_008810295.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13813	25	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	1e-118	GRAS family protein

Link Out ? help Back to Top
Phytozome	Aco010118.1