PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010168.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 474aa    MW: 50123.9 Da    PI: 6.9425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010168.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.33.6e-15251297455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+ Y+ksLq
  Aco010168.1 251 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIGYLKSLQ 297
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-20244309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.688247296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.32E-16250301No hitNo description
Gene3DG3DSA:4.10.280.105.7E-20251305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-13251297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-17253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MNHLVPEFEL DVDDPFLVSS FVPAPHRCKI SESALAESEL LELIWRNGPV AQPVHGDWIR  60
GLSPPPPESP GSAALSGRAD AGLVVDVASQ LFMEEDEMAS WLHYQIGGGG GGDLFFGSSP  120
QDIGNDGRAA AAAAAAAAAS TAAAERLVAA PKESAVGSNE VSVVEVCDPY GVGTGGGGGS  180
PRACEQALSS SSEASSERRG MAHADERKRK AREGGGGSGC HSEKDTEFRT LEKRKDARRS  240
AAGRRSRAAE VHNLSERRRR DRINEKMKAL QELIPRCNKS DKASMLDEAI GYLKSLQSQI  300
QMMSAGCSIN PAMFPGVQPY MPPMGMGMGM GMGMGMGMHM GMNMAPGMTI GAEVGGGGLR  360
PPMLPFGPLL PCASIASPAR PLPIMPSIHP PNVVNVNQFR VQAASQQALA SNMQSQYMVQ  420
IPHVGDPYHG FVPVNPFQVS SQNGVVEKPE ANKQAGNNEN IPHGRLKCRN LWK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6667150.0KM666715.1 Ananas bracteatus clone 52079a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020079826.10.0transcription factor PIF1-like isoform X1
TrEMBLA0A199US060.0A0A199US06_ANACO; Transcription factor PIF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2499145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.14e-32phytochrome interacting factor 3-like 5