PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010173.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 221aa    MW: 24212.8 Da    PI: 5.0417
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010173.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-193585155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                 + y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa+a++ a+++l+g
  Aco010173.1 35 CPYRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTALEAAQAYDSAARNLYG 85
                 67*****999.**********8...3.35***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-203694IPR016177DNA-binding domain
SMARTSM003801.6E-313699IPR001471AP2/ERF domain
PROSITE profilePS5103220.9033693IPR001471AP2/ERF domain
PfamPF008474.4E-133685IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-293793IPR001471AP2/ERF domain
CDDcd000181.26E-273791No hitNo description
PRINTSPR003674.3E-103748IPR001471AP2/ERF domain
PRINTSPR003674.3E-105975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MQGSEQQQQQ KKCCPLRRSR KGCMKGKGGP ENQQCPYRGV RQRTWGKWVA EIREPNRGAR  60
LWLGTFNTAL EAAQAYDSAA RNLYGDCARL NLNLNHPNPP QLTSTSPNHQ PNTLLCPSTP  120
TYSPPRSADS TTTTTTTTTT TTTTSDSTVP GGGIESPGFF CGVDAGLDDF DDYVTRLPKA  180
EDFGLEGFQE VPLFNDVGFC DTELDRDLMS FDALQLSWCS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-163794361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1081431e-87AK108143.1 Oryza sativa Japonica Group cDNA clone:002-139-E11, full insert sequence.
GenBankAP0046231e-87AP004623.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0705A05.
GenBankAP0054111e-87AP005411.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16.
GenBankAP0149641e-87AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAY3393751e-87AY339375.1 Oryza sativa (japonica cultivar-group) Ap22 mRNA, complete cds.
GenBankCP0126161e-87CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020079788.11e-163dehydration-responsive element-binding protein 2C-like
SwissprotQ84ZA19e-64DRE2C_ORYSJ; Dehydration-responsive element-binding protein 2C
TrEMBLA0A199URP71e-138A0A199URP7_ANACO; Dehydration-responsive element-binding protein 2C
STRINGGSMUA_Achr3P00320_0012e-82(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55103454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.15e-37ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]