PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco010221.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 220aa MW: 23626.5 Da PI: 7.1953

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco010221.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.8	3.7e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkCak Cv+apyf +eq +++fa++hk+FGasn +kll++lp +r +a+ ++ yeA+ar+rdP+yG+v++i++lqqq+ +l+a++a+l Aco010221.1 7 PCGACKFLRRKCAKRCVFAPYFSHEQgAAHFAAIHKVFGASNASKLLAHLPVADRCEAAVTISYEAQARVRDPIYGCVAHIFALQQQVVNLQAQVASL 104 7***********************89******************************************************************99 PP DUF260 98 kee 100 k++ Aco010221.1 105 KAQ 107 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.998	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.0E-36	7	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MTGFGSPCGA CKFLRRKCAK RCVFAPYFSH EQGAAHFAAI HKVFGASNAS KLLAHLPVAD 60 RCEAAVTISY EAQARVRDPI YGCVAHIFAL QQQVVNLQAQ VASLKAQARQ GHINCSPSTL 120 SLQEDNFSSR FLPSQAQHGS GFSQKPSNSI NAETMLCYEN GLLNSISFPA PHQCYDPHSY 180 VNDDPVAFAA ADESSSCAMA TLDAQQDVQQ TSFAYLNSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-33	3	101	7	104	LOB family transfactor Ramosa2.1
5ly0_B	8e-33	3	101	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615, ECO:0000269\|PubMed:21806801}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020115032.1	1e-161	LOB domain-containing protein 17-like
Swissprot	Q5UG13	2e-65	LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBL	A0A199URE4	1e-157	A0A199URE4_ANACO; LOB domain-containing protein 29
STRING	XP_008794315.1	3e-81	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	2e-52	lateral organ boundaries-domain 29

Link Out ? help Back to Top
Phytozome	Aco010221.1

Publications ? help Back to Top
Coudert Y,Périn C,Courtois B,Khong NG,Gantet P Genetic control of root development in rice, the model cereal. Trends Plant Sci., 2010. 15(4): p. 219-26 [PMID:20153971] Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Coudert Y, et al. Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice. BMC Genomics, 2011. 12: p. 387 [PMID:21806801]