PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco010304.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 213aa MW: 23278.7 Da PI: 5.5465

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco010304.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	102.1	3.4e-32	29	85	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 l+cprC+s+ntkfCyynnys sqPr++C+aCrr+Wt+GG lr+vPvGg r+ ++++ Aco010304.1 29 PLRCPRCESANTKFCYYNNYSKSQPRHYCRACRRHWTAGGVLRDVPVGGLRKSKRRR 85 689********************************************9876665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-19	25	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.1E-30	30	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.31	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGLSSNHVSG NTVMASQQQQ QQKCESEVPL RCPRCESANT KFCYYNNYSK SQPRHYCRAC 60 RRHWTAGGVL RDVPVGGLRK SKRRRTSKSS PTADTTEDTS AASADLDTTV HAPLHHPTQF 120 PPLDCDVAWF SCPPPSATVN VVESSAYDDM TNPFSSVSSS STSGLSPCNL IGGLDEESLA 180 EFDYWDEMTD LVTLEHNSSP IPGRIVEGSW IE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020115207.1	1e-158	dof zinc finger protein DOF1.1-like
TrEMBL	A0A199UVP1	1e-140	A0A199UVP1_ANACO; Dof zinc finger protein DOF1.7

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	4e-25	Dof family protein

Link Out ? help Back to Top
Phytozome	Aco010304.1