PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010322.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 292aa    MW: 31004.5 Da    PI: 8.449
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010322.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-091154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W+ e ++ + +a + l+ +   +W++I + ++ g+tl+++k+++
      Aco010322.1 11 SWSREQEKAFENALATLPEDcsdRWEKILAAVP-GKTLEDVKLHY 54
                     7********************************.**********9 PP
2Myb_DNA-binding383.7e-12118162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
      Aco010322.1 118 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVISRTPTQVASHAQKY 162
                      6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.352759IPR017884SANT domain
SMARTSM007171.2E-5860IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-91063IPR009057Homeodomain-like
PfamPF002495.4E-71154IPR001005SANT/Myb domain
CDDcd001672.43E-41554No hitNo description
PROSITE profilePS5129416.985110167IPR017930Myb domain
SuperFamilySSF466892.92E-16113168IPR009057Homeodomain-like
TIGRFAMsTIGR015574.5E-17115165IPR006447Myb domain, plants
SMARTSM007176.6E-10115165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-10118161IPR009057Homeodomain-like
PfamPF002491.2E-10118162IPR001005SANT/Myb domain
CDDcd001671.90E-9118163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVMEESSSSS SWSREQEKAF ENALATLPED CSDRWEKILA AVPGKTLEDV KLHYEILVDD  60
ISSIELGRVP LPSYASSSEG ADHANEGSSG KKGGHSHGDS GHGGKGSRSD QERRKGIAWT  120
EDEHRLFLLG LDKYGKGDWR SISRNFVISR TPTQVASHAQ KYFIRLNSMN KDRRRSSIHD  180
ITNVSNGDAS TPPGPITGQT NGQIVNSAKN SKQSSQPPGG PPGVNVYGTT IGQPVGGPIV  240
SAVGTPVTLP VPVAPNMAYG VRAPVGGALV PGAPVNMNPM NYQMPPTSSH R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1712771176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020079744.10.0transcription factor SRM1-like
RefseqXP_020079745.10.0transcription factor SRM1-like
RefseqXP_020079746.10.0transcription factor SRM1-like
SwissprotQ9FNN61e-113SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A199UVN60.0A0A199UVN6_ANACO; Transcription factor DIVARICATA
STRINGXP_008802864.11e-162(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-100MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]