PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010326.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family TCP
Protein Properties Length: 254aa    MW: 25542.6 Da    PI: 11.053
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010326.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.31.6e-39341502120
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..kaaksaa.k 96 
                  +gkk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++++sss sas    g    ++sa+  
  Aco010326.1  34 TGKKAPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTSSSSSASAS--LRGpaP-SASAPfI 128
                  68*******************************************************************8884444444444..222222.2222223 PP

          TCP  97 skksqksaasalnlakesrakara 120
                    k+ +s+a   + +ke  a a a
  Aco010326.1 129 LGKRLRSDA--DAADKEDAAAAAA 150
                  333333333..3444444444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.9924094IPR017887Transcription factor TCP subgroup
PfamPF036347.8E-3340115IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTAPDGATNG KRREREKGMV GKRNGNGNGN GAVTGKKAPS KDRHSKVDGR GRRIRMPIVC  60
AARVFQLTRE LGHKSDGQTI EWLLRQAEPS IIAATGTGTT PASFSTSSSS SASASLRGPA  120
PSASAPFILG KRLRSDADAA DKEDAAAAAA AASAVGVGVG IGPSGGFWAL PARPDFGQIW  180
SFAAAAAAAP EMVVPPASFS GRFAAAAAQP VGEASAARVG NYLPIAQGHL NLLATLSGAP  240
AATSAGRNED ESR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6678884e-94KM667888.1 Ananas bracteatus clone 53334c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020080035.11e-163transcription factor TCP21-like
SwissprotQ9FMX22e-73TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A199VJ861e-119A0A199VJ86_ANACO; Transcription factor TCP7
STRINGXP_008787053.13e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-45TCP family protein