PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco010532.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Dof

Protein Properties

Length: 181aa MW: 19270.8 Da PI: 10.2228

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco010532.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	105.3	3.3e-33	23	79	4	60
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l+cprC stntkfCyynny++sqPr++C+aC+ryWt+GGalrnvP Ggg +k+ Aco010532.1 23 PPLQCPRCGSTNTKFCYYNNYNTSQPRHYCRACERYWTHGGALRNVPPGGGGGGKKR 79 5689*******************************************9887654444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	26.618	25	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.1E-30	25	74	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-17	27	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MAAEARKPKQ QQQQQQRQAP HPPPLQCPRC GSTNTKFCYY NNYNTSQPRH YCRACERYWT 60 HGGALRNVPP GGGGGGKKRA AKSRTADPNF PTPNSSKLPK LNIIADAAAA AAAAMAPPPP 120 TPIFHGGIEG LALRPAAINP GEFFGGLRGF QPYSNNNMNF PHVPPHGAVN NMCGNCLTGL 180 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020092865.1	8e-83	dof zinc finger protein DOF1.4-like
TrEMBL	A0A498INY7	6e-28	A0A498INY7_MALDO; Uncharacterized protein
STRING	XP_009352402.1	5e-29	(Pyrus x bretschneideri)
STRING	XP_009352403.1	5e-29	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-23	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Aco010532.1