PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco010538.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB_related

Protein Properties

Length: 527aa MW: 58285 Da PI: 7.343

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco010538.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35	3.4e-11	474	523	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r++W+ E+e l + v+++G g+Wk I ++ + k Rt+ ++k++w+++ Aco010538.1 474 RKKWSSLEEETLRKSVERHGVGNWKFIKQCHPsifKDRTEVDLKDKWRNL 523 789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.797	469	526	IPR017930	Myb domain
SuperFamily	SSF46689	2.66E-14	471	525	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-11	471	525	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-7	473	526	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-8	474	523	IPR001005	SANT/Myb domain
CDD	cd11660	9.26E-18	475	525	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MIDPDVAAWI LDFLLRQTLD DSLVHRLILS LPIPAPSPSS PLHRTLILRR LSSDLSRRSL 60 SPRTLHSLEL LSSLPRPSSA AALRAAYAAV AADLTVKPLR PSSRGGDDDG GGGGGGEGGG 120 EGEFYDAVNR IWNCRVADLE AAAEGAEGAE AAAGLVSPEL RATRREMEEA VVDATVRAGL 180 VVRYTEERAF QAVRVYLEEA WKELGPSFLE LAAEALIGMA KGKGLEMENP NSSKPSPEEG 240 SRLLELVNHS GTVNKRGKEI IEENTHEGES SSPELHDPSS VGWNRMGKCK STNFRSFENA 300 NESGNRCTKT ILKLDRDSAA ERRPSMMERN PTARTIEVSI FNISVSTKPE LICCIVVEVR 360 KNQLLFTVSC SYGLIDIQPV CCAAGSHHYP KEQVFLHSPG LIDCQSQLTS VPARWVSRTC 420 INYSRKANHE TWDDLFGSPL PANPVEEPHV SYPQKGKDSL LVKDNNQFIL RKRRKKWSSL 480 EEETLRKSVE RHGVGNWKFI KQCHPSIFKD RTEVDLKDKW RNLVRH*

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MIDPDVAAWI LDFLLRQTLD DSLVHRLILS LPIPAPSPSS PLHRTLILRR LSSDLSRRSL  60
SPRTLHSLEL LSSLPRPSSA AALRAAYAAV AADLTVKPLR PSSRGGDDDG GGGGGGEGGG  120
EGEFYDAVNR IWNCRVADLE AAAEGAEGAE AAAGLVSPEL RATRREMEEA VVDATVRAGL  180
VVRYTEERAF QAVRVYLEEA WKELGPSFLE LAAEALIGMA KGKGLEMENP NSSKPSPEEG  240
SRLLELVNHS GTVNKRGKEI IEENTHEGES SSPELHDPSS VGWNRMGKCK STNFRSFENA  300
NESGNRCTKT ILKLDRDSAA ERRPSMMERN PTARTIEVSI FNISVSTKPE LICCIVVEVR  360
KNQLLFTVSC SYGLIDIQPV CCAAGSHHYP KEQVFLHSPG LIDCQSQLTS VPARWVSRTC  420
INYSRKANHE TWDDLFGSPL PANPVEEPHV SYPQKGKDSL LVKDNNQFIL RKRRKKWSSL  480
EEETLRKSVE RHGVGNWKFI KQCHPSIFKD RTEVDLKDKW RNLVRH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093221.1	0.0	uncharacterized protein LOC109713512 isoform X1
TrEMBL	A0A199UMS9	8e-90	A0A199UMS9_ANACO; Single myb histone 3

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16050	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	1e-10	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Aco010538.1