PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010539.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SBP
Protein Properties Length: 210aa    MW: 22650.9 Da    PI: 9.6998
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010539.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.51.7e-4298173277
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  Cq+e+C+adl+eak+yhrrhkvCe+hskapvv+v+gl+qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk++
  Aco010539.1  98 CQAERCAADLTEAKRYHRRHKVCEAHSKAPVVVVAGLRQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKSS 173
                  **************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-3592159IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.59995172IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.73E-4096176IPR004333Transcription factor, SBP-box
PfamPF031105.9E-3298171IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MERKATSGES KRKETKPRRE PPPSFTSAAV VAADDAEEEE EEDSPAAAAA AAGAEEEKKR  60
RSGSSSSPLT SSAVVARRGS SSSSSAAAAA GAAAPPSCQA ERCAADLTEA KRYHRRHKVC  120
EAHSKAPVVV VAGLRQRFCQ QCSRFHELSE FDDSKRSCRR RLAGHNERRR KSSLETQGEG  180
SSRCRQSDQD GRVPINISGN PPYKHFQIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-3888171184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091963.11e-147squamosa promoter-binding-like protein 3
SwissprotQ6Z4613e-47SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A199W6814e-92A0A199W681_ANACO; Squamosa promoter-binding-like protein 13
STRINGGSMUA_Achr4P23650_0018e-66(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.21e-41squamosa promoter binding protein-like 4