PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010544.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 762aa    MW: 83536 Da    PI: 4.9966
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010544.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.3e-07233252525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C+ffar G+C  G++C+F H
  Aco010544.1 233 ICDFFAR-GWCIKGNSCTFLH 252
                  8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.31E-6228253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.92228255IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-5233252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4233255IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MARCAESEPG SPAEDEEEKD EAEVEEEVEE EEEDDEEEEM ELEEEEEVEE EEVEEEGEED  60
GEGDMPYSVD GDDTRTKVES GGRPEELKLN SSAHERSGAN PASVSQLVDD NGGNITACDP  120
LVEMQAARRN EVPIEALRDT KRYIDDAHDN YRSRIGSRGL NGSESGGNVF ETHIENPKHD  180
RIGEQNVPIL HTNADLRSFE NCSVSSLNSP RRRRRSSSPG TPLENSTKKP AVICDFFARG  240
WCIKGNSCTF LHQKELVITD SQSPKDVGGP CKKDGVADHT DSAQAERSKL STDSTEGAER  300
SKLPTGSAKE EETPKLSASF EPRDSLNAET SSEIDHQRAL VLAYGGENHT LPHLSGEHHL  360
HASKTVEEGF IAQDDSQSNR TSTFPRNQLG RPQMIREEYQ QPFGIKRTYL GYINHHASGW  420
GKEPLSFSNQ QGHYSIYDSR SSYSSSKLLN PTIDYSLNPL TGSPSSNRGS TPSSLEHING  480
GGKYDSWSAS LPRSSSPFFS RSEVESSTHQ KILREKRAEI QGNAWENSVP FRSSFCSLHL  540
GKPAPQNQYD PFVDSLDPLK GGNISDNTGL SGNPTHGSNA QKATTVSGNP GHGFNAQKVS  600
TDLSGNPNHG SNSQKATNAL PPPHEELLDN KSSLELGGGH KSNPKDRKEK VSHVNEGANA  660
KEANCDIKQV EKAKSDKESK ALKVFRSALV DCVKELVKPF WREGRLSKDS HNTIVKKAVE  720
KVLGAIQQVP TNTEAVNNYL SSSKPKLLKL VEGYVQKYGK S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092709.10.0zinc finger CCCH domain-containing protein 36-like isoform X1
TrEMBLA0A199W6P90.0A0A199W6P9_ANACO; Protein FRIGIDA-ESSENTIAL 1 (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-26C3H family protein