PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010557.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 358aa    MW: 38983.1 Da    PI: 6.9706
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010557.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.2e-10103128127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC+ f++ GtC+y  +C+FaHg+
  Aco010557.1 103 FKTKLCCKFRA-GTCPYVTNCNFAHGM 128
                  69*********.*************95 PP
2zf-CCCH43.45.7e-14235260126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ +  tG+C++G++C+FaHg
  Aco010557.1 235 WKTRICNKWEMTGYCPFGSKCHFAHG 260
                  8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.66E-8100133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-14100135IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014102128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028102129IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7103128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-7171200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685172200IPR000571Zinc finger, CCCH-type
SMARTSM003560.11172199IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-8172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-17230264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-10231265IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9234261IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422234262IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11235260IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDYNSSAIEI IPDASGPESW AAAAAQNDQA MWATDDDYRN WNPDPSTDPN PNYFTDRQSQ  60
SHSQSQSRAG SEQPPTKKPR GSSSQGEGSN STSKSRAIGK MFFKTKLCCK FRAGTCPYVT  120
NCNFAHGMEE LRKPPPNWQE IVAAQEEGAE VREENQIPII TSANVGGDGQ RSYKGRHCKK  180
FYTEEGCPYG DMCTFLHDEQ SKARESVAIS LSPTVGGTSN FGPGPNGLAQ KPSNWKTRIC  240
NKWEMTGYCP FGSKCHFAHG AAELHRYGGG LVEMDSRDAA SATPDSKQAV VSTKAPAEAA  300
AASTTVVPHA DVYHIGVPSQ RPAVVNQRQA QGQRPLQKWK GPDKISRIYG DWIDEIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092472.10.0zinc finger CCCH domain-containing protein 56 isoform X1
SwissprotQ84UQ31e-163C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A199V1710.0A0A199V171_ANACO; Zinc finger CCCH domain-containing protein 56
STRINGXP_008788660.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-101C3H family protein