PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010600.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 238aa    MW: 25783.3 Da    PI: 4.5574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-1876125355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y GVr+++ +g+++AeIrd + ng  +r++lg+f+t+e Aa a+++a+++ +g
  Aco010600.1  76 YIGVRRRP-WGKFAAEIRDSTRNG--ARVWLGTFDTEEAAALAYDQAALSVRG 125
                  89******.**********44465..***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.375133IPR001471AP2/ERF domain
SMARTSM003805.6E-3175139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2875134IPR001471AP2/ERF domain
PfamPF008472.9E-1375125IPR001471AP2/ERF domain
PRINTSPR003676.1E-97687IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2176134IPR016177DNA-binding domain
CDDcd000182.96E-1676132No hitNo description
PRINTSPR003676.1E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDSPNSYFSS SSSSSSSSSD SSLFGEFFPF GPDDAEEMLS FGTLADTGEG APPDEAKKNG  60
AEEGVAAAAG RKERSYIGVR RRPWGKFAAE IRDSTRNGAR VWLGTFDTEE AAALAYDQAA  120
LSVRGAAAVL NFSEERVRES LEGLQWGEEE EGCSPVMVLK KRHSLRRSRG GGGGGGVGRK  180
RRRRVVVSHG EEDDQEIKEV VRVENVVVLE DLGVEYLEEI LRISEIANTT YYSSTEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2564135774Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159181KKRHSLRRSRGGGGGGGVGRKRR
2178182RKRRR
3179184KRRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020091368.11e-169ethylene-responsive transcription factor 1B-like
TrEMBLA0A199VZ221e-134A0A199VZ22_ANACO; Ethylene-responsive transcription factor 1B
STRINGXP_010527399.11e-55(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-26ethylene response factor 1