PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011026.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 236aa MW: 25339.7 Da PI: 6.9797

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011026.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.9	6.3e-42	67	166	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++lk++la+ + Aco011026.1 67 PCAACKILRRRCVDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKLLQDLPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNELKVQLARSQ 164 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Aco011026.1 165 AE 166 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.039	66	167	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-42	67	164	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
TLLSLSYSME HSSDTTTTTT TTTTATTTGT TTFPYRHASS PTSSSSPASS PPPPLPLSSS 60 PPVVLSPCAA CKILRRRCVD KCVLAPYFPP TEPLKFTTAH RVFGASNIIK LLQDLPESQR 120 ADAVSSMVYE ANARIRDPVY GCAGAICQLQ KQVNELKVQL ARSQAELVAT RTQHANLLAL 180 LCVEAVQQQH QQQQPQPPSS PALLPAAAVT PYGFQNDGLL FVDDCSSVWE EPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-42	62	168	6	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-42	62	168	6	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020087239.1	1e-165	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-67	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A199UTJ3	1e-112	A0A199UTJ3_ANACO; LOB domain-containing protein 1
STRING	XP_008795252.1	9e-88	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-61	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Aco011026.1