PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011044.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 257aa MW: 29469.8 Da PI: 9.6014

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011044.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.8e-05	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C k F r nL+ H+r H Aco011044.1 27 FFCETCRKGFQREQNLRLHLRGH 49 67*******************98 PP
2	zf-C2H2	14.7	8.8e-05	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C k F r nL+ H+r H Aco011044.1 138 FFCETCRKGFQREQNLRLHLRGH 160 67*******************98 PP
3	zf-C2H2	15.6	4.5e-05	218	239	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg+++ s+L+ H++t+ Aco011044.1 218 ECERCGRMYALDSDLRAHLKTC 239 8*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.5E-4	26	49	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.96E-9	26	49	No hit	No description
Pfam	PF12171	2.0E-5	27	49	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.637	27	54	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.07	27	49	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2
SMART	SM00355	58	71	101	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.96E-9	133	160	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-4	137	160	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	2.0E-5	138	160	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.637	138	165	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.07	138	160	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	140	160	IPR007087	Zinc finger, C2H2
SMART	SM00355	58	182	212	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	3.32E-8	204	254	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.4E-6	205	238	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.162	217	244	IPR007087	Zinc finger, C2H2
SMART	SM00355	150	217	237	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MRRKKSDTPG AEVVALTAEE LVATNRFFCE TCRKGFQREQ NLRLHLRGHN IPSELQRRAE 60 GVAPTRGRCV YVCPVEDCVY HDPARALGDI TGIKKHFSRK HGEKRWEIWR KMRRKKSDTP 120 GAEVVALTAE ELVATNRFFC ETCRKGFQRE QNLRLHLRGH NIPSELQRRA EGVAPARGRC 180 VYVCPVEDCV YHDPARALGD ITGIKKHFSR KHGEKRWECE RCGRMYALDS DLRAHLKTCP 240 GTQILRCPTC GEDFTR*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020086794.1	1e-103	protein indeterminate-domain 13-like
Swissprot	F4JYZ8	7e-50	IDD13_ARATH; Protein indeterminate-domain 13
TrEMBL	A0A2I0BGI7	1e-53	A0A2I0BGI7_9ASPA; Zinc finger protein MAGPIE
STRING	Pavir.Ia01907.1.p	2e-53	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60470.1	3e-52	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aco011044.1

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]