PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011052.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Trihelix

Protein Properties

Length: 204aa MW: 24605.9 Da PI: 9.8295

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011052.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.5	2.3e-15	3	61	24	86
trihelix 24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +k++kplWee s+++r +gf r+++qCk+kw+nl +r+k +++ +++ +++p+ ++++ Aco011052.1 3 TKRNKPLWEEMSNRLRCKGFFRTAEQCKSKWKNLVTRFKGCEALQQDA----NKQFPFHEEMR 61 5789****************************************9985....56799999996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.051	1	37	IPR017877	Myb-like domain
Pfam	PF13837	2.1E-13	3	63	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MATKRNKPLW EEMSNRLRCK GFFRTAEQCK SKWKNLVTRF KGCEALQQDA NKQFPFHEEM 60 RRIFSKRMER VLSSDTNKEG NEEEEEEEEK MDERSKRKGG VVKKKKKRKE LEEEVAVALK 120 EFVRRQAERE AWWVEAAEAR EAERRVKEEE WRSAMAALSE ERVAMERRWR EREEERRSRE 180 EVRAERRHAL IMSLLNKLAN EEA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	108	KKKKKRK
2	103	108	KKKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269\|PubMed:15310827}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269\|PubMed:15310827}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020087248.1	1e-136	trihelix transcription factor GT-3b-like isoform X1
Swissprot	O80450	2e-31	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	A0A199VZ06	2e-84	A0A199VZ06_ANACO; Trihelix transcription factor GT-3b (Fragment)
STRING	XP_007140273.1	5e-50	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12595	31	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	6e-25	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Aco011052.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]