PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011053.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 613aa    MW: 65146 Da    PI: 7.9275
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011053.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08263283526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C++Gd C +aHg
  Aco011053.1 263 PCPEFRK-GSCRHGDACEYAHG 283
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.7E-1049146IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.39E-1064143IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.3967143IPR020683Ankyrin repeat-containing domain
SMARTSM002486006797IPR002110Ankyrin repeat
CDDcd002041.41E-869143No hitNo description
SMARTSM002480.13102135IPR002110Ankyrin repeat
PROSITE profilePS500889.992102127IPR002110Ankyrin repeat
PfamPF000232.5E-6102137IPR002110Ankyrin repeat
PROSITE profilePS5010312.925258285IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5258284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4261284IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5263283IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.625293317IPR000571Zinc finger, CCCH-type
SMARTSM0035639293316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MSESKPSAAA AAADAEGAAL LLELAASDDV EGFRRAVEEG GLPLDVAAPW YGRSFSGGGG  60
RMRMGVEQRT PLMIAALYGG AAVLGYILSV APGEALRSSP SDGATPLHLA ASGGSPSSPA  120
LVRLLLSSYS ADPDALDLSG RRPGDLIPRS LPASLNSNPG SPLHLLLLKS PSPSPSPSPP  180
WSGSGSAKPS SSPPTPKKEY PPDLTLPDIK NGIYSTDEFR MYAFKVKPCS RAYSHDWTEC  240
PFVHPGENAR RRDPRKFLYS CVPCPEFRKG SCRHGDACEY AHGVFESWLH PAQYRTRLCK  300
DETGCARRVC FFAHKPDELR AVNPSLASVS AGLALPSPRS SNDAAAAALI LFQQQQQQTL  360
PPRLKASLSA RDLDFELDLL GLEGYQQKLL DELSSNSNSI SISNPNSCGS PRTAWPAANL  420
LDPLVLSQMM QQQQHNHNHR HHQQQQQPQL LSGGFGSNLP SPSPPADHST MAKAIMNSRA  480
SAFAKRSYSF CDRGASSAAS PARASPSPPS LLSDWASPGG KLDWGIQGEE LSKLRKSASF  540
GFRTNQSPVS APPPPSATRL SSTGSSSGHD EPDLSWVQSL VKDGPAAPPT RLGQLDAGRH  600
YFHGADQEQM VA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6634290.0KM663429.1 Ananas bracteatus clone 47858a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937855.10.0zinc finger CCCH domain-containing protein 33
SwissprotQ688R31e-165C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A199VY980.0A0A199VY98_ANACO; Zinc finger CCCH domain-containing protein 33
STRINGXP_008789109.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.13e-86C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]