PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011071.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 258aa    MW: 28129.4 Da    PI: 5.2108
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011071.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd  l ++vk +G ++W++I+  ++ gR++k+c++rw + 
      Aco011071.1 13 KGSWSPEEDAMLTQLVKDHGARNWSLISDGIP-GRSGKSCRLRWCNQ 58
                     799*****************************.***********985 PP
2Myb_DNA-binding52.98.4e-1767109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+ Ed  +v a++q+G++ W++Iar ++ gRt++ +k++w++ 
      Aco011071.1  67 PFTPAEDAAIVAAHAQFGNK-WAAIARLLP-GRTDNAIKNHWNST 109
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.211859IPR017930Myb domain
SuperFamilySSF466898.99E-3011106IPR009057Homeodomain-like
SMARTSM007174.1E-161261IPR001005SANT/Myb domain
PfamPF002493.9E-171358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-241466IPR009057Homeodomain-like
CDDcd001671.02E-151557No hitNo description
PROSITE profilePS5129424.77960114IPR017930Myb domain
SMARTSM007171.4E-1464112IPR001005SANT/Myb domain
PfamPF002497.2E-1467109IPR001005SANT/Myb domain
CDDcd001671.96E-1267110No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2367113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MVAEERQQQQ RIKGSWSPEE DAMLTQLVKD HGARNWSLIS DGIPGRSGKS CRLRWCNQLS  60
PDVHHRPFTP AEDAAIVAAH AQFGNKWAAI ARLLPGRTDN AIKNHWNSTL RRRRRHAAAN  120
ATAPDLAGAD DSNKRLCIRD DDGDPADEEV EAAVVAARIP PPPPPLVITA DPVTSLSLSP  180
PGEAASSSGG AGEAERRSEV PATMTAMRDM CFVTIMRQMI AEEVKSYINQ LRMEDNDGDC  240
CRNSVAVKSE PEFNDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-36121133104MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-36121133104C-Myb DNA-Binding Domain
1msf_C2e-36121133104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086015.10.0transcription factor MYB44-like
SwissprotO231604e-53MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A199VX911e-148A0A199VX91_ANACO; Transcription factor MYB44
STRINGXP_010253806.14e-74(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.13e-54myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]