PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011092.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 183aa MW: 20421.5 Da PI: 7.4236

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011092.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.8	2.2e-44	18	117	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+C+kdC++ap fp+e+p+kfa+vhk+FGasnv+k+l++lp ++r da++slvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la+++ Aco011092.1 18 PCASCKLLRRRCTKDCIFAPFFPSEDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQLAVAQ 115 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Aco011092.1 116 AE 117 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.87	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-44	18	115	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
KRFNLSVDLI FVMGGNSPCA SCKLLRRRCT KDCIFAPFFP SEDPHKFAIV HKVFGASNVS 60 KMLQELPVHQ RADAVNSLVY EANARMRDPV YGCVGAISYL QNQVSQLQMQ LAVAQAEILC 120 IQMQQEPPLM ADHQQQIDSD DKSNYLMHNS NMISGMPSLM NFASPSNNVA TQEPLKRESL 180 WT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	14	119	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	14	119	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020081982.1	1e-126	LOB domain-containing protein 12-like
Refseq	XP_020087484.1	1e-126	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	6e-81	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A199V8J7	1e-123	A0A199V8J7_ANACO; LOB domain-containing protein 12
STRING	XP_008804108.1	2e-94	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	2e-83	LBD family protein

Link Out ? help Back to Top
Phytozome	Aco011092.1

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]