PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011109.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 557aa    MW: 60773.8 Da    PI: 7.3409
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011109.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.71.2e-33208266260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh+k
  Aco011109.1 208 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLVDGRITEIVYKGTHNHPK 266
                  8********************************************************85 PP
2WRKY105.43e-33379437159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Aco011109.1 379 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTTGCPVRKHVERASHDLRAVITTYEGKHNHD 437
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.31E-26204267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-29204267IPR003657WRKY domain
SMARTSM007747.4E-37207266IPR003657WRKY domain
PROSITE profilePS5081126.567208267IPR003657WRKY domain
PfamPF031061.6E-25208265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-37364439IPR003657WRKY domain
SuperFamilySSF1182903.14E-29371439IPR003657WRKY domain
PROSITE profilePS5081138.526374439IPR003657WRKY domain
SMARTSM007741.4E-38379438IPR003657WRKY domain
PfamPF031061.2E-25380437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MGSSTGSLEH TTNTTLSPFS FTTPFATSFS ELLAGVSDED RSKSPTSRAG GGGGFGSGVP  60
KFKSTPPPSL PLSPPPISPS SYFAIPAGLS PAELLDSPVL LSSHNMMFPS PTTGTFPAQA  120
FNWRPNNSNN SQPGVFKDEN RAYSDFSFHT NTKPQISNTS MFQPLPTTNS KEEFAPQNSN  180
TKDDIAVAAA AAPEIPVPNI LREPRKSDDG YNWRKYGQKQ VKGSENPRSY YKCTYPNCPT  240
KKKVERSLVD GRITEIVYKG THNHPKPQNT RRSSASSASS APPQALQSSA PINSEASDSF  300
GGAMDSVATP ENSSISFGDD EIDASAPRSN LEGEEIDEDE PDAKRWKKEG ENEGASAAGN  360
RTVREPRVVV QTTSDIDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTTTGC PVRKHVERAS  420
HDLRAVITTY EGKHNHDVPA ARGSRPLADN NNNNNNNNNV MAIRPSAING PSHLFHGRLN  480
APANQAPFTL EMLQAPAGNY GFPNYNASSM NSSSYMNQLQ QQQQQQQQQQ QRQVESMLQK  540
TKEEPRDDLF FDSLLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37208440878Probable WRKY transcription factor 4
2lex_A5e-37208440878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6672170.0KM667217.1 Ananas bracteatus clone 52609c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087293.10.0probable WRKY transcription factor 26
SwissprotQ6IEQ71e-151WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A199V9430.0A0A199V943_ANACO; Putative WRKY transcription factor 33
STRINGXP_008804160.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-109WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]