PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011192.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 399aa MW: 44290.6 Da PI: 9.7812

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011192.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.6	5.5e-07	175	198	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++CpdCg+ F +++L++H++ H Aco011192.1 175 FSCPDCGEIFVKSDSLEVHQSIrH 198 89******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.45	175	203	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	177	198	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	2.59E-22	200	397	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.7E-11	202	397	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MAETRRAREP MKRIKETQKL NHQEPESPSY REALRNLFTC RSRHRAAAAA AAAAEAKNKK 60 NGRRIGCSGS LCNLKDDSRI MQKPERDASP EPVKRRASVS SCNVNERSTK KPLGEANRVV 120 STSSSSHSSA SSTSSIGGSF RGMHLRRLSG CYECHMVIDP INGLLRDSSL RATIFSCPDC 180 GEIFVKSDSL EVHQSIRHAV SELGTEDTSR NIVEIIFQSS WLKKQAPICK IDRILKVHNT 240 QKTKTKFEDY RECIKNKASK LSKKYPRCIA DGNELLRFHC TTIKCSLGLH GSTNLCDSIP 300 QCSVCSIIRD GFKTDKNGRI VTMATSGRAH DNAKISLDDE RRAMLLCRVI AGRVKRNQDS 360 VEEYDSVAGT AGVYSNLDEL FVFNPKAILP CFVVIYRG*

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MAETRRAREP MKRIKETQKL NHQEPESPSY REALRNLFTC RSRHRAAAAA AAAAEAKNKK  60
NGRRIGCSGS LCNLKDDSRI MQKPERDASP EPVKRRASVS SCNVNERSTK KPLGEANRVV  120
STSSSSHSSA SSTSSIGGSF RGMHLRRLSG CYECHMVIDP INGLLRDSSL RATIFSCPDC  180
GEIFVKSDSL EVHQSIRHAV SELGTEDTSR NIVEIIFQSS WLKKQAPICK IDRILKVHNT  240
QKTKTKFEDY RECIKNKASK LSKKYPRCIA DGNELLRFHC TTIKCSLGLH GSTNLCDSIP  300
QCSVCSIIRD GFKTDKNGRI VTMATSGRAH DNAKISLDDE RRAMLLCRVI AGRVKRNQDS  360
VEEYDSVAGT AGVYSNLDEL FVFNPKAILP CFVVIYRG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM667133	1e-128	KM667133.1 Ananas bracteatus clone 52537b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093808.1	0.0	uncharacterized protein LOC109713920
TrEMBL	A0A199VTW6	0.0	A0A199VTW6_ANACO; Uncharacterized protein
STRING	GSMUA_Achr5P01120_001	1e-169	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	2e-99	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Aco011192.1