PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011242.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 318aa    MW: 35321 Da    PI: 8.1183
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011242.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
      Aco011242.1 14 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding47.44.3e-1567154147
                      TSSS-HHHHHHHHHHHHHTTTT..........................................-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..........................................tWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEdel+++++ +lG++                                          +W++Ia  ++ gRt++++k++w+++
      Aco011242.1  67 RGNFTDEEDELIIKLHGLLGNKydsllllyyxtvsqvpvtiwlasmrkelptpvdelspprpqaRWSLIAGQLP-GRTDNEIKNYWNTH 154
                      89************************************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.433965IPR017930Myb domain
SMARTSM007174.1E-141363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-241568IPR009057Homeodomain-like
SuperFamilySSF466893.38E-221589IPR009057Homeodomain-like
CDDcd001672.04E-111661No hitNo description
PROSITE profilePS500909.30362155IPR017877Myb-like domain
SMARTSM007171.3E-1166157IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-967156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-246985IPR009057Homeodomain-like
CDDcd001678.72E-769155No hitNo description
PfamPF002491.7E-6127154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-24129160IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY  60
LRPDLKRGNF TDEEDELIIK LHGLLGNKYD SLLLLYYXTV SQVPVTIWLA SMRKELPTPV  120
DELSPPRPQA RWSLIAGQLP GRTDNEIKNY WNTHIKRKLI SRGLDPQTHR PLSTAAAAAT  180
ATAATAIAVA TPSLHREVTP MELKPSTDLS TEDCCQHSGG TANLDEDRCP DLNLDLSISL  240
PNCSSPKTSA SSESLTPPNA PQEVTTPISL IPTYSTTPIC LCYHLGFQSK KPCNCQTSKN  300
PHVFRYYRPL EEGQYIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22141597108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083437.10.0myb-related protein 308-like isoform X1
RefseqXP_020083442.10.0myb-related protein 308-like isoform X2
TrEMBLA0A199VQ470.0A0A199VQ47_ANACO; Myb-related protein 308
STRINGXP_008799190.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.17e-81myb domain protein 4