PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011304.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

GRAS

Protein Properties

Length: 555aa MW: 61869.6 Da PI: 4.8745

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011304.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	442.7	2.6e-135	185	554	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++lL++cA a+ +++ e+aqa++++l++++s +gdp qRlaay++e+Laar+a+s+++lykal+++e + +s++l+a+++++ev+P++kf++++aN Aco011304.1 185 KQLLFDCAAAILEDSIEEAQAIINELRHMVSIQGDPPQRLAAYLVEGLAARIASSGQGLYKALKCKEPP---TSDRLSAMQILFEVCPCFKFGFMAAN 279 589***************************************************************9...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 aI ea++geervHiiDfdi+qG Q+++L+q+L++ +++pp+lRiTgv++pes+ l+ +g+rL+k+Ae +gvpfef++ +a+r+ed+++ +L+ Aco011304.1 280 YAITEAFKGEERVHIIDFDINQGSQYITLIQSLSTMSNNPPHLRITGVDDPESVqrAVGGLKIIGQRLEKLAEGCGVPFEFRA-IASRTEDVTPAMLD 376 ************************************************99878889*******************.7********* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++pgEal Vn+++qlh+++desvs+ ++rd++L++vk+l Pk+v+vveq++++n+++F+ rf+e +yysa+f+sl+a lpres +r++vE+++l+r+ Aco011304.1 377 CRPGEALLVNFAFQLHHMPDESVSTVNQRDQLLRMVKGLGPKLVTVVEQDVNTNTAPFFPRFVEVYNYYSAVFNSLDAALPRESADRMNVEKQCLARD 474 ********************************************************************************************** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ivn+vacega+r+er e ++kWr+r+++aGF + p++ + ++++ll+ + ++ y+v+ee g+l++gW+d++Lv++SaW+ Aco011304.1 475 IVNIVACEGADRIERYEAAGKWRARMTMAGFVSCPFNANSSGSIRSLLKSYCDR-YKVKEEGGALYFGWEDKTLVVASAWQ 554 ************************************************66.***********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.38	158	535	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.9E-133	185	554	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MSTSYGDTNL SARKSSSERM QMFISDERFH YRANSYLSDI YAQAYFTNSS RVHTSHREVS 60 SAPYDLMANT RSSIILNTPY NSCFSSAKQP DSSLSSNISH HSSQSVLDNR SSEHEVDFTE 120 DDIRLKLQEL EQALLNDNDP DQDMGIDEEW VEPIKELLVA SSPKESSSES IIYCIGNRKE 180 AQTPKQLLFD CAAAILEDSI EEAQAIINEL RHMVSIQGDP PQRLAAYLVE GLAARIASSG 240 QGLYKALKCK EPPTSDRLSA MQILFEVCPC FKFGFMAANY AITEAFKGEE RVHIIDFDIN 300 QGSQYITLIQ SLSTMSNNPP HLRITGVDDP ESVQRAVGGL KIIGQRLEKL AEGCGVPFEF 360 RAIASRTEDV TPAMLDCRPG EALLVNFAFQ LHHMPDESVS TVNQRDQLLR MVKGLGPKLV 420 TVVEQDVNTN TAPFFPRFVE VYNYYSAVFN SLDAALPRES ADRMNVEKQC LARDIVNIVA 480 CEGADRIERY EAAGKWRARM TMAGFVSCPF NANSSGSIRS LLKSYCDRYK VKEEGGALYF 540 GWEDKTLVVA SAWQ*

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MSTSYGDTNL SARKSSSERM QMFISDERFH YRANSYLSDI YAQAYFTNSS RVHTSHREVS  60
SAPYDLMANT RSSIILNTPY NSCFSSAKQP DSSLSSNISH HSSQSVLDNR SSEHEVDFTE  120
DDIRLKLQEL EQALLNDNDP DQDMGIDEEW VEPIKELLVA SSPKESSSES IIYCIGNRKE  180
AQTPKQLLFD CAAAILEDSI EEAQAIINEL RHMVSIQGDP PQRLAAYLVE GLAARIASSG  240
QGLYKALKCK EPPTSDRLSA MQILFEVCPC FKFGFMAANY AITEAFKGEE RVHIIDFDIN  300
QGSQYITLIQ SLSTMSNNPP HLRITGVDDP ESVQRAVGGL KIIGQRLEKL AEGCGVPFEF  360
RAIASRTEDV TPAMLDCRPG EALLVNFAFQ LHHMPDESVS TVNQRDQLLR MVKGLGPKLV  420
TVVEQDVNTN TAPFFPRFVE VYNYYSAVFN SLDAALPRES ADRMNVEKQC LARDIVNIVA  480
CEGADRIERY EAAGKWRARM TMAGFVSCPF NANSSGSIRS LLKSYCDRYK VKEEGGALYF  540
GWEDKTLVVA SAWQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-66	191	553	26	378	Protein SCARECROW
5b3h_A	4e-66	191	553	25	377	Protein SCARECROW
5b3h_D	4e-66	191	553	25	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020095493.1	0.0	scarecrow-like protein 1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A199W1A5	0.0	A0A199W1A5_ANACO; Scarecrow-like protein 1
STRING	XP_008806489.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5175	38	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Link Out ? help Back to Top
Phytozome	Aco011304.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]