PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011341.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 26960.5 Da    PI: 9.6899
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011341.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.62.9e-27956148
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 krien++ rqvtf+kRrng+lKKA+ELSvLCdae+a+++fs +g+ly+
  Aco011341.1  9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEIALVVFSARGRLYD 56
                 79********************************************95 PP
2K-box111.58.7e-37731694100
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +s++++e + ++++qqe+akL+ +i+ Lq+ +Rhl+Ge+L++Ls+keL+qLe++Le+++++iRskK+e l+++i+++qk+e +lq++n++Lr+k++e
  Aco011341.1  73 NSSSAVEINSHQYYQQEAAKLRHQIQILQNANRHLMGESLSNLSVKELKQLENRLERGITRIRSKKHEQLFAEIDYMQKREADLQNDNMYLRAKIAE 169
                  444459999*************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.27E-27167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.581161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-39160IPR002100Transcription factor, MADS-box
CDDcd002653.38E-38266No hitNo description
PRINTSPR004047.6E-30323IPR002100Transcription factor, MADS-box
PfamPF003198.7E-251055IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-2879167IPR002487Transcription factor, K-box
PROSITE profilePS5129715.9683173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK KAYELSVLCD AEIALVVFSA RGRLYDVRST  60
IERYKKACSN NSNSSSAVEI NSHQYYQQEA AKLRHQIQIL QNANRHLMGE SLSNLSVKEL  120
KQLENRLERG ITRIRSKKHE QLFAEIDYMQ KREADLQNDN MYLRAKIAES ERAQQASMVS  180
GGAELDTLPT FDSRNYYHVN MLEAASHHYS QHQDQPTLHL GYEIKANQGS KNLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-18160160Myocyte-specific enhancer factor 2B
1tqe_Q7e-18160160Myocyte-specific enhancer factor 2B
1tqe_R7e-18160160Myocyte-specific enhancer factor 2B
1tqe_S7e-18160160Myocyte-specific enhancer factor 2B
5f28_A7e-18160160MEF2C
5f28_B7e-18160160MEF2C
5f28_C7e-18160160MEF2C
5f28_D7e-18160160MEF2C
6c9l_A7e-18160160Myocyte-specific enhancer factor 2B
6c9l_B7e-18160160Myocyte-specific enhancer factor 2B
6c9l_C7e-18160160Myocyte-specific enhancer factor 2B
6c9l_D7e-18160160Myocyte-specific enhancer factor 2B
6c9l_E7e-18160160Myocyte-specific enhancer factor 2B
6c9l_F7e-18160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094464.11e-163MADS-box transcription factor 21-like
SwissprotQ8RU311e-109MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLA0A199UZQ41e-148A0A199UZQ4_ANACO; MADS-box transcription factor 21 (Fragment)
STRINGGSMUA_Achr7P23690_0011e-135(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-96MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dreni L, et al.
    The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
    Plant J., 2007. 52(4): p. 690-9
    [PMID:17877710]