PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011363.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family LBD
Protein Properties Length: 270aa    MW: 27157.6 Da    PI: 8.4872
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011363.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601407.6e-44481471100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+ +l ++k
  Aco011363.1  48 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVGVISILQHQLRQLQMDLTTAK 145
                  7*********************************************************************************************9999 PP

       DUF260  99 ee 100
                  +e
  Aco011363.1 146 SE 147
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.94647148IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-4348145IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MASSSSAPIH VSSSSVAAAS VPSSSAAAAS AAAAAAAAAA AGGGTSSPCA ACKFLRRKCQ  60
PDCVFAPYFP PDNPQKFVHV HRVFGASNVT KLLNELHPYQ REDAVNSLAY EADMRLRDPV  120
YGCVGVISIL QHQLRQLQMD LTTAKSELSK YQAAAAAAAA AASAAPSTAN FIGGMSSGPP  180
GGSGAHTFMN MNHPIGIGIS SGGSGGFGRD QFFSVGMREQ QAMMRGYDDM TARVAAMSAV  240
GMGPLGGGGG VQFLRPSAAG GDERPSSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-55381511114LOB family transfactor Ramosa2.1
5ly0_B8e-55381511114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1349332e-93AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence.
GenBankAC1376172e-93AC137617.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0084P24, complete sequence.
GenBankAP0149612e-93AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankAY9406812e-93AY940681.1 Zea mays ASYMMETRIC LEAVES2 mRNA, complete cds.
GenBankEF0814542e-93EF081454.1 Zea mays indeterminate gametophyte 1 (IG1) gene, complete cds.
GenBankEU9648172e-93EU964817.1 Zea mays clone 281759 mRNA sequence.
GenBankEU9660922e-93EU966092.1 Zea mays clone 291632 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086921.10.0LOB domain-containing protein 6
RefseqXP_020086930.10.0LOB domain-containing protein 6
RefseqXP_020086938.10.0LOB domain-containing protein 6
SwissprotQ32SG31e-85LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A199VA051e-127A0A199VA05_ANACO; LOB domain-containing protein 6
STRINGXP_008807271.14e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.44e-56LBD family protein