PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011393.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

FAR1

Protein Properties

Length: 363aa MW: 41779.8 Da PI: 10.1457

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011393.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.7	7.9e-23	77	167	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +f+n+YA++ GF vrk++ k++ ++g ++ r+fvCs+ g r++++ + t+++r++r+ tr++C ++ ++ + +++w v++++ +HnH+l Aco011393.1 77 DFFNKYARQKGFIVRKDNVKRHPETGMVVYRRFVCSRAGLRDKKHMNrTDRQRKERTLTRCECPVQFGIQFDPtTNRWFVHNFVDKHNHDL 167 6***************************************999887889999*************999*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-21	77	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
YRGTNDGLDM QPDGIEFYRW KQKTVCLDAK LIGNSLIMAS FVDRNIKVFG ARDGVELLVE 60 YEDIIQKTFS SENEGNDFFN KYARQKGFIV RKDNVKRHPE TGMVVYRRFV CSRAGLRDKK 120 HMNRTDRQRK ERTLTRCECP VQFGIQFDPT TNRWFVHNFV DKHNHDLDDV AVRRSRRKIK 180 DVQKSDTVLP EITGVRKHET VNVTGRENGG HENVGSALKD AKTSSPSDGR GGVSSSSEEM 240 TRFCDLMNLG KKVFHEASKT KEDYQEIMLY LENKLKQKEK RGLCLEVLTQ LESKLEGGIE 300 KNALSTKLLD PFSVKTKATP KKRPKPSNEI RRYKCRFCRC FGHTIRRCPL SQKDAMQLTA 360 IK*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

YRGTNDGLDM QPDGIEFYRW KQKTVCLDAK LIGNSLIMAS FVDRNIKVFG ARDGVELLVE  60
YEDIIQKTFS SENEGNDFFN KYARQKGFIV RKDNVKRHPE TGMVVYRRFV CSRAGLRDKK  120
HMNRTDRQRK ERTLTRCECP VQFGIQFDPT TNRWFVHNFV DKHNHDLDDV AVRRSRRKIK  180
DVQKSDTVLP EITGVRKHET VNVTGRENGG HENVGSALKD AKTSSPSDGR GGVSSSSEEM  240
TRFCDLMNLG KKVFHEASKT KEDYQEIMLY LENKLKQKEK RGLCLEVLTQ LESKLEGGIE  300
KNALSTKLLD PFSVKTKATP KKRPKPSNEI RRYKCRFCRC FGHTIRRCPL SQKDAMQLTA  360
IK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020084838.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A199V9Y2	3e-60	A0A199V9Y2_ANACO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-16	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aco011393.1