PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011419.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 226aa    MW: 24997.1 Da    PI: 8.6288
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011419.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12160205655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L++l+P+     +k  s +++L +Av+YIk+Lq
  Aco011419.1 160 SIAERERRTRISKKLRKLQDLVPNM----DKQTSTSDMLDLAVHYIKELQ 205
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.361154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-16157217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-12158209No hitNo description
Gene3DG3DSA:4.10.280.106.1E-16159218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-10160205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-13160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGIKMLWLTG MTTTRGIGNY SQAGSDAVHA MANSRLRSQW SFSRQDSVLS QISEMSIPEI  60
GESGNSSDEA TGHAGQSYIS SNLLGASWED TNSIMFSSPG KRGKESNGDV ITSLSNFDSQ  120
FGMPKTSAEF ADMERYLQMH QDSVACKVRA KRGCATHPRS IAERERRTRI SKKLRKLQDL  180
VPNMDKQTST SDMLDLAVHY IKELQSQVQK LNQEQENCTC TSKKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6641841e-165KM664184.1 Ananas bracteatus clone 48953a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020088695.11e-161transcription factor bHLH128-like
SwissprotQ8H1026e-51BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A199VAI11e-158A0A199VAI1_ANACO; Transcription factor bHLH128
STRINGGSMUA_Achr1P27710_0011e-112(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]