PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011464.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ARF
Protein Properties Length: 998aa    MW: 111323 Da    PI: 6.4428
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011464.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23133234199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++++
  Aco011464.1 133 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QELQARDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVSGKRLIAGDSVLFI--RDEKQQ 226
                  99*****************************954.5444.38************************************************..568888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+++++r+
  Aco011464.1 227 LLLGIRRA 234
                  9****997 PP
2Auxin_resp121.75.3e-40259342183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+v+YnPras+seFvv+++k++ka++ +++s+GmRf+m fete+s +rr++Gt++gvsdldpvrW+nS+Wr+L+
  Aco011464.1 259 AAHAAANHSPFTVFYNPRASPSEFVVPFAKYQKAVYgNQISLGMRFRMLFETEESGTRRYMGTITGVSDLDPVRWKNSQWRNLQ 342
                  79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-44122262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.0E-41126248IPR015300DNA-binding pseudobarrel domain
CDDcd100176.00E-20132224No hitNo description
PfamPF023625.0E-21133234IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97133235IPR003340B3 DNA binding domain
SMARTSM010198.3E-23133235IPR003340B3 DNA binding domain
PfamPF065071.2E-34259342IPR010525Auxin response factor
PfamPF023093.0E-12866961IPR033389AUX/IAA domain
PROSITE profilePS5174525.838877961IPR000270PB1 domain
SuperFamilySSF542779.81E-8891956No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 998 aa     Download sequence    Send to blast
MKATASSAAP SAAPNGSDGT GEKRTINAEL WHACAGPLVS LPPVGSLVVY FPQGHSEQVA  60
ASMQKDIDVH VPNYPNLPSK LICLLHNVTL HADSETDEVY AQMTLQPVST YDKEALQLSE  120
LALRQTRPPM EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDYSMQPPA QELQARDLHD  180
NTWTFRHIYR GQPKRHLLTT GWSLFVSGKR LIAGDSVLFI RDEKQQLLLG IRRANRQPTN  240
ISSSVLSSDS MHIGVLAAAA HAAANHSPFT VFYNPRASPS EFVVPFAKYQ KAVYGNQISL  300
GMRFRMLFET EESGTRRYMG TITGVSDLDP VRWKNSQWRN LQVGWDESAA GERRNRVSIW  360
EIEPVAAPFF ICPPPFFRTK RPRLPGMPDD ESSDMENLFK KAMPWLGEEI CIKDPQTRST  420
IMPGLSLIQW MNMQQSQSDH LRPLAGPIMQ NLSPADISKQ FGLQNNMQFN APKHPQHTQQ  480
TGQPPKTTVP LNQLGSADII RTNQCFQSIS QAQPLNQTQS NLTQPQLLVQ NQLLQPQPQP  540
HPHPHPQQQQ NIAPNQANQQ LPQQSDSQIQ LQLLQKLQLQ QQSMLLQPVT PLPQLPHIQE  600
QQKALLDTQQ PFSLPQQQMI TQPYEKFPPQ QPLEQVLSPT KIVSTAGSSL VPAGAPRSVL  660
TDDVPSCSTS PSTNNGGVLT NSIINRTQNC NTNNMEKTSN EPTKLNHNIQ KEGVICAMNY  720
INNTPQMDYL DTSSSATSVC LSQTDGPSQP GFSMPSFNQQ QLFKEAFPET EFQDTDMKNN  780
ALFGANFESQ FGIPLTADAL LENGIDCEKY ENHFPENVVA AYSNKSKDGQ QELSSSMISQ  840
SFGVQDMALN SIDSAISESA FLNRKTRAQA PSMQRKKTFT KVFKTGAVGR SIDITRYSGY  900
DELKHELACM FNIEGQLEDQ QGSGWKLVFI DHEGDILLVG DEPWENFINC VRRIRILSPQ  960
ESVNGQFGWQ LGQQQQQHSS QSSMQQFGWW ECMEGSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1731836342388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403030.10.0PREDICTED: auxin response factor 19-like isoform X1
RefseqXP_009403031.10.0PREDICTED: auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0D9VC450.0A0A0D9VC45_9ORYZ; Auxin response factor
STRINGLPERR02G03100.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19