PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011488.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family AP2
Protein Properties Length: 442aa    MW: 47931.4 Da    PI: 6.1041
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011488.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.15.3e-14199249155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Aco011488.1 199 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 249
                  89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.97E-25199259No hitNo description
SuperFamilySSF541713.53E-17199259IPR016177DNA-binding domain
PfamPF008471.1E-9199249IPR001471AP2/ERF domain
SMARTSM003806.2E-31200263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-16200257IPR001471AP2/ERF domain
PROSITE profilePS5103215.659200257IPR001471AP2/ERF domain
PRINTSPR003674.9E-6201212IPR001471AP2/ERF domain
PRINTSPR003674.9E-6239259IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLFDVAFSEE ETSSRRTSAA AAAAAEDEDD AAAAVTRQFF PLEDPGVSGA GAGGEARGGA  60
AEEAEAEPPP PPPRAHWVGV EFRRWAAEQE EPPGPALPEL PIPRRHLLPP HRALGIPHMV  120
DSTPHTPQLG KFCLFFSLLY LKMDQAYDRA AIKFRGVDAD INFGLDDYQE DMKQMSNLTK  180
EEFVHVLRRQ STGFPRGSSK YRGVTLHKCG RWEARMGQFL GKKYVYLGLF DTEIEAARAY  240
DKAAIKCNGK DAVTNFDPSI YADELDSAVD DSNDHNLDLC LGSAGSKRSS SDQHVATGFE  300
PESQPSTFGD RFKQPEQEHL LMNFHINHSS YIRPEFRLIH PQQFNPAYHH QHPARGLSLT  360
IGGGGEGEGK GEGRGNCPHP PPLPPPPGEA APSPQMFAAA TAAAAAAAAA ASSGFPAQIV  420
RPGQAWLQTN GFHSLTRPTH R*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6669558e-60KM666955.1 Ananas bracteatus clone 52368a microsatellite sequence.
GenBankKM6669568e-60KM666956.1 Ananas bracteatus clone 52368b microsatellite sequence.
GenBankKM6669578e-60KM666957.1 Ananas bracteatus clone 52368c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020090949.11e-177LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor TOE3
SwissprotB8AVJ92e-85APL25_ORYSI; APETALA2-like protein 5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-76AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]