PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011622.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 459aa MW: 51050.5 Da PI: 5.9258

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011622.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.4e-32	256	310	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHe+Fveav++L G++kAtPk +l+lm+v+gLt++hvkSHLQkYRl Aco011622.1 256 KPRLRWTLDLHEHFVEAVNKLDGPDKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 310 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-31	253	311	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.532	253	313	IPR017930	Myb domain
SuperFamily	SSF46689	8.6E-17	255	310	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-24	256	311	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-7	258	309	IPR001005	SANT/Myb domain
Pfam	PF14379	6.6E-22	345	392	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MNSHSIVTVK QSNSPERTAH YCQAAPSKIS KIFKGQQDHQ SLSGNNSSSS GEFSYLLNPK 60 LSPESDSESP ISHVSLPHYS EPIFSRSSMF CTSLFSSSSK SSDSCRRLSN LPFLPHPLKC 120 EQQTSAAQDS DSPFHFTSDI NNTPNSEDEH SDELMKDFLN LSGDASDGSF HGENCDSNSL 180 AITEQMELQI LSEQLGIAIT DNEESPRLDD IYEKPQISPQ PVSSCQNQNP QPSGSPIKVQ 240 LHSTPSASRA TTNNNKPRLR WTLDLHEHFV EAVNKLDGPD KATPKGVLKL MNVEGLTIYH 300 VKSHLQKYRL AKYLPETKED KKSLPVEDKK VTPVTNDSGG KKKNMEMTEA LRMQIEVQKQ 360 LHEQLEIQRA LQLRIEEHAR YLQKILEEQQ KASNSFASSM GVSAEAQVES PDKTSQDQDE 420 SKTDSVSSPT ALKHRIPESD GDCKPPEDHK RARLQVEQ*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MNSHSIVTVK QSNSPERTAH YCQAAPSKIS KIFKGQQDHQ SLSGNNSSSS GEFSYLLNPK  60
LSPESDSESP ISHVSLPHYS EPIFSRSSMF CTSLFSSSSK SSDSCRRLSN LPFLPHPLKC  120
EQQTSAAQDS DSPFHFTSDI NNTPNSEDEH SDELMKDFLN LSGDASDGSF HGENCDSNSL  180
AITEQMELQI LSEQLGIAIT DNEESPRLDD IYEKPQISPQ PVSSCQNQNP QPSGSPIKVQ  240
LHSTPSASRA TTNNNKPRLR WTLDLHEHFV EAVNKLDGPD KATPKGVLKL MNVEGLTIYH  300
VKSHLQKYRL AKYLPETKED KKSLPVEDKK VTPVTNDSGG KKKNMEMTEA LRMQIEVQKQ  360
LHEQLEIQRA LQLRIEEHAR YLQKILEEQQ KASNSFASSM GVSAEAQVES PDKTSQDQDE  420
SKTDSVSSPT ALKHRIPESD GDCKPPEDHK RARLQVEQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-24	256	313	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-24	256	313	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-24	256	313	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-24	256	313	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-24	256	313	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-24	256	313	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-24	256	313	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-24	256	313	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM663872	2e-75	KM663872.1 Ananas bracteatus clone 48493 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020090624.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3 isoform X3
Swissprot	Q6YXZ4	1e-132	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A199USV5	0.0	A0A199USV5_ANACO; Protein PHR1-LIKE 1
STRING	GSMUA_Achr10P23260_001	1e-165	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	2e-98	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco011622.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]