PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011713.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GATA
Protein Properties Length: 345aa    MW: 35467.5 Da    PI: 6.4177
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011713.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67.1e-18243277135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Aco011713.1 243 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 277
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.2E-16237287IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385241273IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-13241275IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.95E-14241301No hitNo description
CDDcd002023.56E-14242289No hitNo description
PROSITE patternPS003440243268IPR000679Zinc finger, GATA-type
PfamPF003201.0E-15243277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASEWEMGMG GVEYFGMGVG MGATFSNAAN ITTPITTASG VSPAYLYGLP SATDSLRIDD  60
LLDFSNQEAF PAAAAAGVDN LLLPPTEPSS AITGGSSSSD FQSNLHCSFT DELYFPSEEA  120
AELEWLSTFV DDSFSDVVPY PPSSSAANLP PPAASAEAGH LGADVSGAAG RGAAEQAREA  180
ARGRLSRRGG GGGGAAAAVV AVVVVVVVVF PSSKPRSGNG RARKNGGGGD HHQVGVEGGV  240
RRCTHCASEK TPQWRTGPLG PKTLCNACGV RYKSGRLVPE YRPAASPTFV LTQHSNSHRK  300
VMELRRQKEL LLLRHRDTSS SSAAAAAAAA AAAADLIFHD YGVC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580342e-72AK358034.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1067G03.
GenBankAK3658412e-72AK365841.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020094116.10.0LOW QUALITY PROTEIN: GATA transcription factor 2-like
TrEMBLA0A199UMS80.0A0A199UMS8_ANACO; GATA transcription factor
STRINGXP_008796101.11e-97(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46212955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-41GATA transcription factor 2