PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011741.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 783aa    MW: 82426.3 Da    PI: 6.8804
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011741.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.22.8e-894247813374
         GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++L+e+A++v++g++  a+ +Larl+++  +p g+p+ R a+yf+eAL   l++s     + lp s++ + +++ +l+a+k+fsevsP+l f+++t  
  Aco011741.1 424 DQLIEAAKMVEAGNAVGARGILARLNQHlPAPVGKPLLRSAFYFKEALGLVLSNS----PDPLPNSPS-PLDVVFKLSAYKAFSEVSPVLHFANFTRV 516
                  79************************9999***********************93....344444444.4679************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                  qa+le++  ++r+ +iDfdi+ G++W +++q+La+R+     +++p l+iT++ sp s+ +  el+ ++e+L++fA+ l++pfef++l   +le++++
  Aco011741.1 517 QALLEELGAADRISVIDFDIGVGGHWSSFMQELAQRRrctaaGSAPALKITAFISPPSShHPLELHLVRENLSRFAADLDIPFEFSFL---TLESFHP 611
                  **********************************9998999888********8665554499*************************9...9****** PP

         GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                  ++L    +Ea+aVnl l+  + +          +++L+lvk+l Pk+vv v++  d+ + +F+ +fl al+ +++l+ds++a+ ++  + + k+Er+l
  Aco011741.1 612 SDLLSVGDEAIAVNLPLSSSHDP--------SFPTLLRLVKQLAPKIVVSVDHGFDRCDLPFASHFLCALQSHVSLLDSIDAS-GASFDVADKIERFL 700
                  ***9999**********888877........3567*********************************************999.666699******** PP

         GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  l+++i++++  +++      e++ +W+  +++aGF pv++s+++++qa++ll++v+++g++ve++++sl+l+W++r+LvsvSaWr
  Aco011741.1 701 LQPRIESALLGAHRV----AEKMPHWKTLFSSAGFAPVQFSNFTETQAECLLKRVQVRGFHVEKRQASLFLYWQRRELVSVSAWR 781
                  *********998887....8999*************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.564396761IPR005202Transcription factor GRAS
PfamPF035149.7E-87424781IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MKGMPFNAQI KGALEEVVER RRLFAGKGVG GEEEAIFWVS KACGGGGHKE GSEPRSVLDR  60
RRSPSPPTSS STFSSSLGGG GGGGGASDVA AVPDNNPAAA HQWPLSSPVG GGGASDLPPM  120
TATAEAAGVG HEMGFVGGGG ERCGLGGGDE WEAMLSGSAA ASAAAAVPEQ SFLRWIMGDA  180
VEGGAGNAAP GFGFVDHPSS FGLELIGAAF GSASAVSHSA PPHPHPPHPL ASNVSSSGGF  240
SPTSSNNSIN KIPSFGNQIA ESLLSPLPAA LLHNPMEEKP QLFGPSGLLL NPLQQQQQPH  300
APPSPGFFVP VASSYAAAHV EHQLLLPPRP KRHHAIPGEP TCQIPFGGAS SELFLRPSQL  360
PPQPQNSGFP RPQPVRHDAQ PRPTKPKAAA GHEAAAASVG VGVGLHPPPP PPLPQQQQQQ  420
AVADQLIEAA KMVEAGNAVG ARGILARLNQ HLPAPVGKPL LRSAFYFKEA LGLVLSNSPD  480
PLPNSPSPLD VVFKLSAYKA FSEVSPVLHF ANFTRVQALL EELGAADRIS VIDFDIGVGG  540
HWSSFMQELA QRRRCTAAGS APALKITAFI SPPSSHHPLE LHLVRENLSR FAADLDIPFE  600
FSFLTLESFH PSDLLSVGDE AIAVNLPLSS SHDPSFPTLL RLVKQLAPKI VVSVDHGFDR  660
CDLPFASHFL CALQSHVSLL DSIDASGASF DVADKIERFL LQPRIESALL GAHRVAEKMP  720
HWKTLFSSAG FAPVQFSNFT ETQAECLLKR VQVRGFHVEK RQASLFLYWQ RRELVSVSAW  780
RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-3245778137375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093474.10.0scarecrow-like protein 27
TrEMBLA0A199VG070.0A0A199VG07_ANACO; Scarecrow-like protein 6
STRINGXP_008796953.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-99GRAS family protein