PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011852.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 448aa MW: 49075.9 Da PI: 7.3242

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011852.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00045	339	373	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ L++++ + +K + a++L++++ YIk L Aco011852.1 339 KMAEKITALQQIVSPF-----GKTDTASVLQETIVYIKFL 373 5677888888888887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.096	324	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-7	339	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-8	339	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.50E-4	339	378	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MWHVGRSNSY SSSSCDDVGV GASASTPTTT LVNAAPNGGR SSLSTDPLSA AAAAVDGLLS 60 EPMEHRLWSQ LLLSSGNGGT MHNNHGVGGE NFLDLLNSKS LAPELFDPAY ESYPKPSKLG 120 NNTYYEFTDT TAAPALNHLE ALELSHYNPS MVEPSEIKMT HPSMNLATNW CSTAASPNPR 180 YSGSNLYETH SSLSQARERS GLVLQQHHPS YMEPFNAPID LNNSLMELNN KLNYSGVAEL 240 PWTSNRNFSD FIAFNGCLKK QEVGVKASKH CMMNSSESNE RKKQAYEVTS IRGDGRNSGA 300 ASVGKKRKSE ESSEALLKKP KNESSSAAAS LRVQVPKVKM AEKITALQQI VSPFGKTDTA 360 SVLQETIVYI KFLHEQVQLL SDPYIKSSSC KDQNLWGVDQ RKEKEEAKLE LRSRGLCLVP 420 LSCTSQVYRD NNGPDYWTLP YRSCLYR*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MWHVGRSNSY SSSSCDDVGV GASASTPTTT LVNAAPNGGR SSLSTDPLSA AAAAVDGLLS  60
EPMEHRLWSQ LLLSSGNGGT MHNNHGVGGE NFLDLLNSKS LAPELFDPAY ESYPKPSKLG  120
NNTYYEFTDT TAAPALNHLE ALELSHYNPS MVEPSEIKMT HPSMNLATNW CSTAASPNPR  180
YSGSNLYETH SSLSQARERS GLVLQQHHPS YMEPFNAPID LNNSLMELNN KLNYSGVAEL  240
PWTSNRNFSD FIAFNGCLKK QEVGVKASKH CMMNSSESNE RKKQAYEVTS IRGDGRNSGA  300
ASVGKKRKSE ESSEALLKKP KNESSSAAAS LRVQVPKVKM AEKITALQQI VSPFGKTDTA  360
SVLQETIVYI KFLHEQVQLL SDPYIKSSSC KDQNLWGVDQ RKEKEEAKLE LRSRGLCLVP  420
LSCTSQVYRD NNGPDYWTLP YRSCLYR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	305	320	KRKSEESSEALLKKPK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020094423.1	0.0	transcription factor bHLH110-like
TrEMBL	A0A2H3ZAX3	1e-111	A0A2H3ZAX3_PHODC; transcription factor bHLH110
STRING	XP_008811082.1	1e-112	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7169	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	6e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco011852.1