PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011928.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

G2-like

Protein Properties

Length: 324aa MW: 36308.2 Da PI: 7.2878

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011928.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.8e-33	37	90	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Aco011928.1 37 PRLRWTPDLHQCFVHAIERLGGQDKATPKLVLQLMDVKGLTISHVKSHLQMYRS 90 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-32	33	94	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.271	33	93	IPR017930	Myb domain
SuperFamily	SSF46689	6.99E-16	35	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-24	37	90	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-8	38	89	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MENNYVYIRG GREKEREMSN CGKSTGAVRQ YIRSKVPRLR WTPDLHQCFV HAIERLGGQD 60 KATPKLVLQL MDVKGLTISH VKSHLQMYRS MRNDMGRKEK QENKHLSEDN GGGGDDDDDD 120 DDGDDDDDDD GPCPSSKPTR EFLSPFLCPA LPPKRSRISQ GRCEKIWNSS YCSGNYMQSV 180 AFERKIKEES FIRWHRYANE FLAKCHDHPS KHLKLALGRV VHESHSSEGN KQNDHQPSSS 240 GKFISEESYV NAAERVVKRE NTYDCSLSLS LSVDPNYRST NTSSASECSS TVSSASRRSF 300 AGSSCYSDGR GINLDLSMSI CGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM666535	1e-162	KM666535.1 Ananas bracteatus clone 51855c microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020084698.1	0.0	uncharacterized protein LOC109707663 isoform X2
TrEMBL	A0A3Q0ICF2	4e-83	A0A3Q0ICF2_PHODC; myb family transcription factor PHL8 isoform X3
STRING	XP_008805079.1	4e-84	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aco011928.1