PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco011931.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 566aa    MW: 60577.9 Da    PI: 8.7639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco011931.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-057799123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+k F r  nL+ H r H
  Aco011931.1 77 FVCEVCNKGFQREQNLQLHRRGH 99
                 89*******************88 PP
2zf-C2H2130.00031154176123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+Lk H +t+
  Aco011931.1 154 WKCDKCSKRYAVHSDLKAHSKTC 176
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.8E-67699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.27E-87699No hitNo description
PfamPF121713.7E-57799IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00417799IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0947799IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM00355160119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.3E-5142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.27E-8149174No hitNo description
SMARTSM0035566154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MDSSTASAPF FGIRDEEPHN QQSLTPSSST AAAAVAAASL PESAAPVKKR RNLPGNPNPD  60
AEVIALSPKT LMATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKLRQKSD KDKARRRVYL  120
CPEPTCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCDKCS KRYAVHSDLK AHSKTCGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAQESA RLPYGLNTAV GSHLYGNSTM ALSLSQVNSQ  240
ITPSLLGGGG GGGSGSGGAA SQFDHLLPPA NASGFRPPHH SLLQTKPFHG LMQLPDIQSD  300
ATANAANAGP TAANLFNLSF FSNGSSGNAM NNNNNNNNNN NGGGGNHSGH LMIHEQFNNG  360
NGNGTEQAAS LFAGNMMSHL FNESNHSDAA SILPQMSATA LLQKAAQMGA TTTSNAPATL  420
FRGLRSPMDH HHHHHHHQNE STHLQDLMNS LVNGGGGGNS GLFTTNHHEQ QEHVAFAGFN  480
HPGMCNLDEV KYHSSSNNNN NNNNNSNSNM SSTVNNIVSS DRLTRDFLGV GGMMRGMGGA  540
EMSSLDPDMK SASSFSGSFS GRSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-32150212365Zinc finger protein JACKDAW
5b3h_F7e-32150212365Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206031e-143AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084112.10.0protein indeterminate-domain 9-like isoform X2
TrEMBLA0A199V4F90.0A0A199V4F9_ANACO; Protein indeterminate-domain 5, chloroplastic
STRINGXP_008812809.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-108C2H2-like zinc finger protein