PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco011945.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 168aa MW: 19483.7 Da PI: 10.4263

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco011945.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.4	1.1e-26	44	93	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i l+d+ kyF+lpi +A+++L+++lTvLKr+CR++GI+RWPhRkiksl Aco011945.1 44 ANIALSDIVKYFNLPIVEASRNLKIGLTVLKRKCREFGIPRWPHRKIKSL 93 79**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.758	28	113	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-21	45	93	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
LMNIDSEGIP HSMEPEAPLN ETHQSASEIE MPIKKGRATT KHVANIALSD IVKYFNLPIV 60 EASRNLKIGL TVLKRKCREF GIPRWPHRKI KSLDSLIHDL QEEVHQQEKE NKVAAVKAVT 120 KRQRMLESEK EAIEKSPFME LERETKRFRQ DVFKRRHRAK DLKKKCP*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020082039.1	1e-119	protein RKD5-like isoform X1
Refseq	XP_020083704.1	1e-119	protein RKD5-like
Swissprot	O81791	7e-52	RKD5_ARATH; Protein RKD5
TrEMBL	A0A199VFV6	1e-110	A0A199VFV6_ANACO; Protein RKD5
STRING	GSMUA_Achr8P13370_001	3e-65	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10673	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-54	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Aco011945.1

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]