PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012003.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family RAV
Protein Properties Length: 387aa    MW: 42741.9 Da    PI: 8.5778
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012003.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.6e-1368116155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+ykGV   + +grW A+I+d      r  r++lg+fg +  Aa+a++ a+++++g
  Aco012003.1  68 SRYKGVVPQP-NGRWGAQIYD------RhCRVWLGTFGDEAAAARAHDVAALRFRG 116
                  78****9888.8*********......44**********99************998 PP
2B390.99.9e-29190283188
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                  f+k+ tpsdv+k++rlv+pk++ae+h     + +  +++ l +ed +g++W+++++y+k+s++yvltkGW++Fvk++gLk +D+v F ++++  
  Aco012003.1 190 FDKAVTPSDVGKLNRLVIPKQHAERHfalksEDIAGKGVLLNFEDGDGKVWRLRYSYWKSSESYVLTKGWSRFVKEKGLKPRDVVGFWRSSSgL 283
                  89*************************9999777789**************************************************8665434 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-868116IPR001471AP2/ERF domain
CDDcd000183.53E-1368123No hitNo description
SuperFamilySSF541712.22E-1568124IPR016177DNA-binding domain
SMARTSM003803.5E-2769130IPR001471AP2/ERF domain
PROSITE profilePS5103219.7369124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1969124IPR001471AP2/ERF domain
PRINTSPR003671.0E-57081IPR001471AP2/ERF domain
PRINTSPR003671.0E-5106126IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.7E-36187294IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-25188284No hitNo description
SuperFamilySSF1019365.89E-29188282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.985190295IPR003340B3 DNA binding domain
PfamPF023623.3E-26190281IPR003340B3 DNA binding domain
SMARTSM010194.3E-19190295IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MFQRNPSCKS QTADNMSADS SCCMGKEFSE KSEVLWWMSS AGASAALDLS APESSVGADA  60
EHRKLPSSRY KGVVPQPNGR WGAQIYDRHC RVWLGTFGDE AAAARAHDVA ALRFRGSDAV  120
TNFKPLSERE EGPTAELAFL AAHSKDEIVD MLRKHTYLDE LRQSRRRHGP KAMTAHSSNN  180
LLGFVREFLF DKAVTPSDVG KLNRLVIPKQ HAERHFALKS EDIAGKGVLL NFEDGDGKVW  240
RLRYSYWKSS ESYVLTKGWS RFVKEKGLKP RDVVGFWRSS SGLEQQLYID VKQRAAMPEG  300
GRIMQPPAAV RDAQMVRLFG VNIFNNTRVG GGEGLDRGGN GSSGGGDGDG DGYHIRSKEI  360
ELFPRQLFYD ASVHFVDGGG DQSYVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-4718729511118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083784.10.0putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotP822801e-110RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A199UFT00.0A0A199UFT0_ANACO; AP2/ERF and B3 domain-containing transcription repressor RAV2
STRINGXP_009613275.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-102related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]