PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012050.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 667aa    MW: 70748.9 Da    PI: 5.9537
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.43.5e-842776653374
         GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn...........sseelaalklfse 86 
                  ++L+e+A+ v++gd+  a+ +Larl+++  s  g  p+ R a yf++AL++ la+  ++  + a +ps+ ++++           ++ +laa+k fse
  Aco012050.1 277 DQLFEAARIVETGDHVGARGILARLNQQlPSAMGkPPLLRSAYYFKQALNHILADpATTPFAPASSPSSGPHRSafstplatphdVAFKLAAYKEFSE 374
                  79************************998777885699****************943333333333333332225777888888899999999***** PP

         GRAS  87 vsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLa.sRp...eg..............ppslRiTgvgspesgskeeleetgerL 165
                  vsP+l+f+++ta qa+le++  + +r+HiiDfdi+ G+QW +++q+La sR+   +               +p l++T+++sp+s +  el+ t+++L
  Aco012050.1 375 VSPVLQFANFTATQALLEELGPSaDRIHIIDFDIGVGGQWSSFMQELAqSRRcttSAsasgaaaaaaavgaAPLLKLTAFVSPSSYHPLELHLTRDNL 472
                  ********************9888************************77777651156778888889998*************************** PP

         GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                  ++fA+el++pfefn+l    l+++++ eL    +Ea+aVnl +   + +        + +++L+lvk+l Pk+v+ +++ +d+++ +F ++f++a++ 
  Aco012050.1 473 THFAAELQIPFEFNIL---PLDSFDPAELLSMGKEAIAVNLPIGCGHGH--------AFPTLLRLVKQLFPKIVISIDHSSDRGELPFGQHFFQAFQS 559
                  ***************9...9*********9999**********988887........4677************************************* PP

         GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                  +  l+ds++++ +  +e  + +E++ll+++i+ ++  +++       +++ Wr  +++aGF pv++s++a++qa++ll++v+++g++ve+++ sl l+
  Aco012050.1 560 CLFLLDSIDSS-GISTEITNRIEHFLLQPRIERAIIGRHST----ASKMMPWRTLFTSAGFVPVHFSNFAETQAECLLKRVQVRGFHVEKRQSSLSLY 652
                  ********988.778899999**************999998....8999************************************************* PP

         GRAS 362 WkdrpLvsvSaWr 374
                  W++ +L+svSaWr
  Aco012050.1 653 WQRGELISVSAWR 665
                  ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.007249645IPR005202Transcription factor GRAS
PfamPF035141.2E-81277665IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
LSSSLGGGGG GGGGGCSSDI AGVAAVSGNN PSTPKWDVAG GIHQRRDEWA AAELQPIAAG  60
LEMAGFIGAG EKCAGIIGVD EWDAMLSESA ASPAHEQSFL RWIMGEADDP AALGITRQQQ  120
QQQQPPQPPP LISQLVGAEF DSGANVGLGF GIPDLDAVGA GGIASAAAAI SPLSLSSEVT  180
SAGGLSLSSN TANSNKVSNP NSNFATHHSG NLLNPLLLSP PPPTQPQPPP SQLPLPQGLF  240
FPEPPMEEKP QLLGAPSFLL NQHQQQQQQQ QQQAVADQLF EAARIVETGD HVGARGILAR  300
LNQQLPSAMG KPPLLRSAYY FKQALNHILA DPATTPFAPA SSPSSGPHRS AFSTPLATPH  360
DVAFKLAAYK EFSEVSPVLQ FANFTATQAL LEELGPSADR IHIIDFDIGV GGQWSSFMQE  420
LAQSRRCTTS ASASGAAAAA AAVGAAPLLK LTAFVSPSSY HPLELHLTRD NLTHFAAELQ  480
IPFEFNILPL DSFDPAELLS MGKEAIAVNL PIGCGHGHAF PTLLRLVKQL FPKIVISIDH  540
SSDRGELPFG QHFFQAFQSC LFLLDSIDSS GISTEITNRI EHFLLQPRIE RAIIGRHSTA  600
SKMMPWRTLF TSAGFVPVHF SNFAETQAEC LLKRVQVRGF HVEKRQSSLS LYWQRGELIS  660
VSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2631666542375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6662960.0KM666296.1 Ananas bracteatus clone 51578a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020084520.10.0scarecrow-like protein 6
TrEMBLA0A2I0W6G80.0A0A2I0W6G8_9ASPA; Scarecrow-like protein 6
STRINGGSMUA_Achr8P11160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-93GRAS family protein