PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco012133.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 143aa    MW: 15697.6 Da    PI: 6.678
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco012133.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.8e-053961123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+++F ++  L  H++ H
  Aco012133.1 39 FSCNYCTRTFDSSQALGGHQNAH 61
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.03E-63766No hitNo description
PfamPF139122.2E-53861IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3023966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSYLSISKLA SMDMEPEEEE LNLSLSLHPS SPPEPARVFS CNYCTRTFDS SQALGGHQNA  60
HKLERSIAKR SRELTAAAMR LHTGASPSAV SRNSKDAWEE LAGGVALTER QKGKKSYNMG  120
RFETGMKHNE ELADEIDLSL KL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083491.11e-101zinc finger protein 2-like
TrEMBLA0A199VSB02e-92A0A199VSB0_ANACO; Zinc finger protein 2
STRINGXP_008789729.11e-32(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-19zinc finger protein 2