PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012136.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 141aa MW: 15053.7 Da PI: 6.2675

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012136.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.2e-05	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H Aco012136.1 34 FSCNYCTRKFYSSQALGGHQNAH 56 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.92E-6	33	62	No hit	No description
PROSITE profile	PS50157	11.032	34	61	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 141 aa Download sequence Send to blast
MLASMDMEPE PEEEDLNLDL SLQPSSPPEP AGVFSCNYCT RKFYSSQALG GHQNAHKLER 60 SITKRRRESA AAAAAAVRPH AGASSGAVGG NSRDAQVESA RVASTERQKG EKSYNVGRFE 120 TGMKKSNEEL AGEIDLSLKL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020083478.1	4e-99	zinc finger protein 2-like
TrEMBL	A0A199VT34	3e-89	A0A199VT34_ANACO; Zinc finger protein 2
STRING	XP_008789729.1	1e-33	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	1e-17	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	Aco012136.1