PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aco012176.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 142aa MW: 16045.8 Da PI: 7.5841

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco012176.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	37.4	7.2e-12	41	93	49	101
DUF260 49 lpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 lp ++r +a++++ eA +r++dPvyG+vgvi+ lqq++ + ela++++++ Aco012176.1 41 LPVHQRAQAAEAMSAEAYWRVQDPVYGSVGVINLLQQHIYMNQRELARTRAQI 93 6889*******************************************999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.2E-9	41	90	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MSTSSHNSNN TSPSPIINES NQRRCAACKY LRRRCSRDCQ LPVHQRAQAA EAMSAEAYWR 60 VQDPVYGSVG VINLLQQHIY MNQRELARTR AQIAIHPAEQ EAHVAYGPAH EPAQFERSAP 120 QDNFVRDTTS TSLEFNHLPD IS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020083409.1	7e-96	LOB domain-containing protein 24-like
TrEMBL	A0A199UKG9	8e-86	A0A199UKG9_ANACO; LOB domain-containing protein 24 (Fragment)
STRING	XP_008801576.1	5e-33	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-16	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	Aco012176.1